Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0483 ATGATGGAGGACGAGAAGGAGAACAAGGGGTTTGATCAAGAATCCTCCGACGAGGTAAAGAAGATGAGCGAAAAGCCGTTTTTGCCTTACTCGGAGCTCCATGAAGGAGAATCTAAGATTAAAATTAATGGAGCTTCAGGTTCAGGTTCACGTTCAGGTTTATTATTACTTCGAGTTTGTGATTTCTGTGGAAAACATTTCAATTCTGGAAAAGCCCTAGGAGGCCACAGGAGGCATCATATCCTAGCTCAAAAAAAAATGGAGGCTCAGAATCAGTCTCATCTGGCTTCTGCAGAACAGTTGAATAATGAGTATTCATCTTGGTCGACCTTGGAAGAATCATCCCCTCCAGTACAAGTTGATCTTTCTTCATCGTGTTCCGGAAGCAGCTGGCTTAAGAAGGATAAAAGAGGAAGAAAAAAAATTGGAGAAGCAGAAGCAACTGAAATTGCAGCTGAAACCCTTATGTATATGCATCTCTATGGTAATTACCACCTTCCTCATCGTCTTCCTCCAGGCGATGAGCCTACTCCTGAAGAAGGAGCACCATTACCAGTCAAGAAAAGGAAGAGCAATGTGATGAACCATGTTGGTGGTTCTTCTTCTTCACCATCTGAAAAACAAAAGAAGAAATCAGAGGGTAGCGATGGAAATGAAGAATTGGAAGCTGAGAATAATATGTGGGATATCAAAGTGATCAGCTTTATCAAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAATAAATTAGGTACAGAGATGATTAAGTCAGAAGGAGAACCACTGATGATAAGAACTGCGAAGAAGCAAGAAGTGAAACCATCAAAAAGCTATGTATGCAACGTCTGCAATAAATCTTTCCCATGTTTTCAAGCTTTAGGGGGACACAAAGCCAAACACAACAGAGACAAGTACATAGCTAAAAGCACCACGGGCAAGGAAGTGGTGGAACAAAGACAAGAAGAAGAAGAAAACAATGTTGCCATTAATGGAGCGTCTCTGATTAGCAGTGAAGAAAGATTTGGAATAAGTTCGAACAATCATGAGAATAACAGTAACAAAGAGAAAGTCGGAGGGGAAAGTCAACAATCTGGTTCGAAAATAAGGGGTTTTGATCTGAATGTGCCTTATGTTTTGGAGCATGAAGCAACTGATATATAA 1161 0.4057 MMEDEKENKGFDQESSDEVKKMSEKPFLPYSELHEGESKIKINGASGSGSRSGLLLLRVCDFCGKHFNSGKALGGHRRHHILAQKKMEAQNQSHLASAEQLNNEYSSWSTLEESSPPVQVDLSSSCSGSSWLKKDKRGRKKIGEAEATEIAAETLMYMHLYGNYHLPHRLPPGDEPTPEEGAPLPVKKRKSNVMNHVGGSSSSPSEKQKKKSEGSDGNEELEAENNMWDIKVISFIKEEEKKKKKKKNKLGTEMIKSEGEPLMIRTAKKQEVKPSKSYVCNVCNKSFPCFQALGGHKAKHNRDKYIAKSTTGKEVVEQRQEEEENNVAINGASLISSEERFGISSNNHENNSNKEKVGGESQQSGSKIRGFDLNVPYVLEHEATDI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0483 386 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Acco05g0483 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Acco05g0483 386 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 40 378 IPR044653 GO:0003700
Acco05g0483 386 MobiDBLite consensus disorder prediction 116 131 - -
Acco05g0483 386 Coils Coil 84 104 - -
Acco05g0483 386 MobiDBLite consensus disorder prediction 339 367 - -
Acco05g0483 386 Pfam C2H2-type zinc finger 59 80 - -
Acco05g0483 386 Pfam C2H2-type zinc finger 278 300 - -
Acco05g0483 386 SUPERFAMILY beta-beta-alpha zinc fingers 59 300 IPR036236 -
Acco05g0483 386 MobiDBLite consensus disorder prediction 168 223 - -
Acco05g0483 386 MobiDBLite consensus disorder prediction 1 33 - -
Acco05g0483 386 MobiDBLite consensus disorder prediction 116 142 - -
Acco05g0483 386 SMART c2h2final6 58 80 IPR013087 -
Acco05g0483 386 SMART c2h2final6 278 300 IPR013087 -
Acco05g0483 386 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Acco05g0483 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0483 Acco-ChrAcco05 6266227 6267387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0483 262 380 C2H2 Transcription Factor Family AT1G27730 30.216 2.96e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g0483 zf-C2H2_6 5.4e-09 CL0361