Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0481 ATGAGCGAAAAGCCGTTTTTGTCTTACTCGGAGCTTCACAAAGGAGAATTTAAGATTAAAATTAACGGAGCTTCAGATTCAGGTTCATGTTCAGGTTTATTATTACTTGGAGTTTGTGATTTCTGTGGAAAACATTTCAATTCTGGAAAAGCCCTAGGAGGCCACAGGAGGCATCACATCCTAGCTCAGAAAAAAATGGAGGCTCAGAATCAGTCTCATCTGGCTTCTGCAGAACAGTTGAATAATGAGTATTCATCTTGGTCGACCTTGGAAGAATCATCACCTCCAGTACAAGTTGATCTTTCTTCATCGTGTTCTGGAAGCAGCTGGCTTAAAAAGGATAAAAGAGGAAGAAAAATCATTGGAGAAGCAGAAGCAACTGAAATTGCAGCTGAAACCCTTATGTATATGCATCTCTATGGGGGACACAAAACCAAACACAACAGAGAGAAGAACATAGCTAAAAGCACCAAGGGCAAGGAAGTGGTGGAACAAAGACAAGAAGAAGAAGAAGAAAACAATGTTGCAATTAATGGAGCGTCTCTGATTAGCAGTGAAGAAAGATTTGGAGTAACTTTTCTTAGGCCATCACTGTATCTTCTGAAATCTCTCAATGGCCACCTCATTGTAGAACTTTGTAAACTGTTCTTGACAAACACACTTCATCTCAAAGGTGAATTTGTGTCATCAGCTGGTTCACTTGATTCAGAGGTGTTCAGAAAACAGTTCAATTCAGGAAAAGCCCTAGGAGGCCACAGGAGATATCACTTCCAAGCTCAGAGAAAGATGAAGGAGCAACAAGAAGATAAGGTCAGTTATACCCTAAGAATCAAGACGAAGAATTTGGTCATCCGCCATAATCATAACAATAATCTCATGAAATCGAAGATTGGGAATGTCAATTGCTCTTCTTGGATACGTTTCCGTTGCCTTGTGTGCGACAAGGATTTTTCATCGACGAAGTCACTGTGCGGCCATATGAGAAATCATCCAAATAGAGATTGGAGAGGTTTGAACCCTCCTCTCACTTCTACAACTGATAACGCTCTAGCTTCTTCAGCTTCTTCTTCAGAAGAGTTTATGAGAGAACAAGATCATCAAAATCACAACAAGAACAATAATAATGGGTCTTCATCTTCAACTTCAGACGAATCATTATCATTACCGGTTGATGTTTCTTCATCTTGTTCTGAAAGCAGCTGGTTCAAGAAAGATATGAGAGGAAGAAAAATCATTGGAGAAGCAGAAGCTGCTCATATTGCAGCTCAAACCCTTATGGATATGCATCTCTATGGGAAGAACAATGGGATGAACAACAATGTTGACGGTTCTTCTTCACCAGCTGGAAAACAAAGCTTGGACAACTGCAAGGAGAAATTAGAGGGTAATGATGGGAATGAGGAATTGGAATCTGAGAATAATATGAAAGTGATCGACTTAATCAAAGAGAAGAAGAAGCTCAATATGAAGCAGAGAAAATTAGGTACAGAGATGATCAAGTCAGGAGGAGAACCGCTGATGATAAGAACTGTGAAGCAAGAAGAAGTGAAACCATAG 1557 0.3988 MSEKPFLSYSELHKGEFKIKINGASDSGSCSGLLLLGVCDFCGKHFNSGKALGGHRRHHILAQKKMEAQNQSHLASAEQLNNEYSSWSTLEESSPPVQVDLSSSCSGSSWLKKDKRGRKIIGEAEATEIAAETLMYMHLYGGHKTKHNREKNIAKSTKGKEVVEQRQEEEEENNVAINGASLISSEERFGVTFLRPSLYLLKSLNGHLIVELCKLFLTNTLHLKGEFVSSAGSLDSEVFRKQFNSGKALGGHRRYHFQAQRKMKEQQEDKVSYTLRIKTKNLVIRHNHNNNLMKSKIGNVNCSSWIRFRCLVCDKDFSSTKSLCGHMRNHPNRDWRGLNPPLTSTTDNALASSASSSEEFMREQDHQNHNKNNNNGSSSSTSDESLSLPVDVSSSCSESSWFKKDMRGRKIIGEAEAAHIAAQTLMDMHLYGKNNGMNNNVDGSSSPAGKQSLDNCKEKLEGNDGNEELESENNMKVIDLIKEKKKLNMKQRKLGTEMIKSGGEPLMIRTVKQEEVKP 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0481 518 SMART c2h2final6 308 330 IPR013087 -
Acco05g0481 518 SMART c2h2final6 37 59 IPR013087 -
Acco05g0481 518 MobiDBLite consensus disorder prediction 498 518 - -
Acco05g0481 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Acco05g0481 518 SUPERFAMILY beta-beta-alpha zinc fingers 38 330 IPR036236 -
Acco05g0481 518 MobiDBLite consensus disorder prediction 324 392 - -
Acco05g0481 518 MobiDBLite consensus disorder prediction 338 358 - -
Acco05g0481 518 ProSitePatterns Zinc finger C2H2 type domain signature. 310 330 IPR013087 -
Acco05g0481 518 MobiDBLite consensus disorder prediction 370 392 - -
Acco05g0481 518 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Acco05g0481 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 308 335 IPR013087 -
Acco05g0481 518 Coils Coil 63 83 - -
Acco05g0481 518 Pfam C2H2-type zinc finger 307 331 - -
Acco05g0481 518 Pfam C2H2-type zinc finger 38 59 - -
Acco05g0481 518 Pfam C2H2-type zinc finger 241 256 - -
Acco05g0481 518 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 300 383 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0481 Acco-ChrAcco05 6256547 6260442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0481 238 348 C2H2 Transcription Factor Family AT2G26940 31.532 2.06e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g0481 zf-C2H2_6 3.1e-05 CL0361