Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0480 ATGAGTGGTTCTCTCACGGCGTTTAATAAGACAAAGACAAAGGGCGGCGCTGAGCGGAAGGGGAATAACGCAAATAGCTTCAATGAAGTAGAGAAGATGAGGGAAAAGCCGTTTTCTTCTTACTCGAAGCTCCACGAACAAAAATCGAAGGTTAAAATTATTGAAGCTTCAATTTCAGGTCTAGGTCCAGGCTCATGTTCATCCACTAGAGTTTGTGATTTATGTGGAAAACAGTTCAATTCAGGAAAAGCCCTAGGAGGCCACAGGAGACATCACATCCAAGCTCAGAGAAAGATGAAGGAGCAACAACAAGATAAGGTCAGTTATACCCTAAGAATCAAGACCAAGAATTTGGTCATCCGACATAATCATGATAATAATCTCATGAAATCGAAGATCGGGAATCTCAATTGTTCTTCTTGGACTTGTTTCCGTTGCCTTGTGTGCGACAAGGATTTTCCATCGGAGAAGTCACTATGCGGACATATGAGAAATCATCTAGATAGAGATTGGAGAAATTTGAACCCTCCTTTCACTTCTACAACTGATGACGCTCTAGCTTCTTCTGCTTCTTCTTCAGAAGAGTTTATGAGAGAACAAGATCATGAAAATCACAACAAGAGCAATAATAATGGGTCTTCATCTTCAACTTCAGACGAATCATTATTATCAGTAAAGGTTGGTGTTTCTTCATCTTGTTCTGGAAGCAACTGGCTCAAGAAAGATATGAGAGGAAGAAAAATCATTGGAGAAGCAGAAGCAGAAGCTGCTCATATTGCAGCTCAAACACTTATGGATATGCATCTCTATGGTCACTCCCAACTTCGTGCTGGGCTTCCTCCTCGTGGGCCTACTCTTGAAGCTGCACAGTTACCAGTCAAGAATAATGTGATGAACAACAATGTTGGTGCTGGAAAACAAAGCTTGGACAACTGCAAGGAGAAATTAGAGGGTAGTGATGGGAATGAAGAATTGGAAGATGAGAATAATATGTGGGATATGAAACTGATCGACTTAATCAAAGAGAAGAAGAAGCTCAGTATGAAGAAGAGAAAATTAGGTTTTCAAGCTTTAGGAGGACACAAAACAAAACACAGGCAGAACATAGTTAAAAGCACCAAGGGCAAGGAAGTGGTGGAACAAAGACAAGAAGAAAAAGAAGACAAGGTTTGCATCAATGGAACTTTATTGTCAAGTGTAGGATTGAGTGGTGAAGAAGAAGTGGGAGAGGCAAGTCAACAATCTGGTTCCAAAACAAGGGGTCTTGATCTGAATGTGCATAATGTTTTGGACAGCACGAAGCAACTGAGATATAAACAAGTCGGCATTTTTTTTATTTGA 1341 0.4042 MSGSLTAFNKTKTKGGAERKGNNANSFNEVEKMREKPFSSYSKLHEQKSKVKIIEASISGLGPGSCSSTRVCDLCGKQFNSGKALGGHRRHHIQAQRKMKEQQQDKVSYTLRIKTKNLVIRHNHDNNLMKSKIGNLNCSSWTCFRCLVCDKDFPSEKSLCGHMRNHLDRDWRNLNPPFTSTTDDALASSASSSEEFMREQDHENHNKSNNNGSSSSTSDESLLSVKVGVSSSCSGSNWLKKDMRGRKIIGEAEAEAAHIAAQTLMDMHLYGHSQLRAGLPPRGPTLEAAQLPVKNNVMNNNVGAGKQSLDNCKEKLEGSDGNEELEDENNMWDMKLIDLIKEKKKLSMKKRKLGFQALGGHKTKHRQNIVKSTKGKEVVEQRQEEKEDKVCINGTLLSSVGLSGEEEVGEASQQSGSKTRGLDLNVHNVLDSTKQLRYKQVGIFFI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0480 446 SMART c2h2final6 144 166 IPR013087 -
Acco05g0480 446 SMART c2h2final6 70 92 IPR013087 -
Acco05g0480 446 Pfam C2H2-type zinc finger 144 168 - -
Acco05g0480 446 Pfam C2H2-type zinc finger 355 367 - -
Acco05g0480 446 Pfam C2H2-type zinc finger 71 92 - -
Acco05g0480 446 Coils Coil 322 342 - -
Acco05g0480 446 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Acco05g0480 446 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 42 426 IPR044653 GO:0003700
Acco05g0480 446 MobiDBLite consensus disorder prediction 178 194 - -
Acco05g0480 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Acco05g0480 446 SUPERFAMILY beta-beta-alpha zinc fingers 71 166 IPR036236 -
Acco05g0480 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Acco05g0480 446 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Acco05g0480 446 MobiDBLite consensus disorder prediction 178 221 - -
Acco05g0480 446 MobiDBLite consensus disorder prediction 1 25 - -
Acco05g0480 446 Gene3D Classic Zinc Finger 70 166 - -
Acco05g0480 446 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0480 Acco-ChrAcco05 6241535 6243042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0480 71 180 C2H2 Transcription Factor Family AT2G26940 35.088 4.69e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g0480 zf-C2H2_6 5.8e-06 CL0361