Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0479 ATGATCGAGAAAAAGAAGGAGAACCAAGGGTTCGATCAGGAATCCTCCGACGAAGAAGAGAAGATGAGCCAAAAGCCGTTTTCGTCTTACTCAGAGCTCCACGAAGGAAAATCCAAGATTAAAATTAATGGAGCTTCAGGTTCAGCTCCAGCTCCAGGTTCATCAGTTAGAGTCTGTGATTTCTGTGGAAAACAGTTCAATTCTGGAAAAGCCCTAGGAGGACACAGGAGATATCACATCCAAGCTCAGAAAAAATTGGAGGCTCAGAATCTGGCTCAACAAAAACAAGAGAAAGTCAATTATACCCTAAGAATCAAGCCCAAGGATTTAGTCATTCGCGATTATGATGATAATAACAATCTCATCAAATCGAGAATTGGGAATTTCAATTCTTCATCTTCAAGATCTTTCCGTTGTTGTGTCTGCGACAAGGATTTCCCGTCGGAAAAGGCACTATACGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCGTTACTACTGATAACGATCTAGATCCTTCTGCAGAAAAATTAAACAATGGTTCTTCATCTTCAACCTCGGAAGAATCATCATCACCAGTACCAGTTGATCTTTCTTCATCTTGTTCTGGAAGCAGCTGGCTTAAGAAAGATAAGAGAGGAAGACAAATCATTGGAGAAGCAGAAGCAGCTCATATTGCAGCTCATACCCTTATGCATATGCATCTCTGGGGGAATGATGAATCGGAAGCTCACACCCTTCGTGGTCGCGAGGCTACTCCAGAAGAAGCCGAACTATTACCAGTCAAGAAAAGGAAGAACAATGTCATGAAGAAGAACCATGTTGCTGATTACAAGGAGAAATTAGAGAGTACAGATGGGAATGAAGAATTGGAAGCTGAGAATAATATGTGGGATGTGAAAGTGATAAGCTTAATCAAAGAGAAGAAGCCGAATAAGAAGATGAACAAAAAGCTGAAATTAGGTGCAGAGATCAAGTCAGAAGGAGAACCGCTGGTGATAAGAACTGTGAAGCAAGAAGAAGTGAAGCCATCACAAAGTTATGCATGTGACATCTGTAATAAGTCTTTCCCATGTTTTCAAGCTTTAGGTGGACACAAATCCAAACACAACAGAGAGAAGAACATAGCTAAAAGCATGAAGGGCAAGGAACTAATGGAACAAAGAGAAGAAAAAGAGGTAGAAGAAGACAAGATGTGCAACAATGGAGCTTTATTGTCAAGTGCAGGATTGAGTGGTGAAGAAGAGGAAGAAGAAGAAGCGTCTCCGATTAGTAGTGAAGAGAGATTAGCAATAAGTTCGAATGATAATAATGAGGATAATAGTAATGGAGAGGAAGTGGGAGAGGCAAGTCAACAATCTGCTTCGAAAATAAGGGGCTTTGATCTGAATGTGCCCTATGTTTTGGAGAACGAAGCAACTGATTTATAA 1452 0.4084 MIEKKKENQGFDQESSDEEEKMSQKPFSSYSELHEGKSKIKINGASGSAPAPGSSVRVCDFCGKQFNSGKALGGHRRYHIQAQKKLEAQNLAQQKQEKVNYTLRIKPKDLVIRDYDDNNNLIKSRIGNFNSSSSRSFRCCVCDKDFPSEKALYGHMRSHPEREWRGMNPPFVTTDNDLDPSAEKLNNGSSSSTSEESSSPVPVDLSSSCSGSSWLKKDKRGRQIIGEAEAAHIAAHTLMHMHLWGNDESEAHTLRGREATPEEAELLPVKKRKNNVMKKNHVADYKEKLESTDGNEELEAENNMWDVKVISLIKEKKPNKKMNKKLKLGAEIKSEGEPLVIRTVKQEEVKPSQSYACDICNKSFPCFQALGGHKSKHNREKNIAKSMKGKELMEQREEKEVEEDKMCNNGALLSSAGLSGEEEEEEEASPISSEERLAISSNDNNEDNSNGEEVGEASQQSASKIRGFDLNVPYVLENEATDL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0479 483 Gene3D Classic Zinc Finger 333 411 - -
Acco05g0479 483 Gene3D Classic Zinc Finger 58 159 - -
Acco05g0479 483 ProSitePatterns Zinc finger C2H2 type domain signature. 357 377 IPR013087 -
Acco05g0479 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 355 382 IPR013087 -
Acco05g0479 483 MobiDBLite consensus disorder prediction 1 52 - -
Acco05g0479 483 SUPERFAMILY beta-beta-alpha zinc fingers 58 159 IPR036236 -
Acco05g0479 483 Pfam C2H2-type zinc finger 137 161 - -
Acco05g0479 483 Pfam C2H2-type zinc finger 57 79 - -
Acco05g0479 483 Pfam C2H2-type zinc finger 355 379 - -
Acco05g0479 483 MobiDBLite consensus disorder prediction 434 466 - -
Acco05g0479 483 MobiDBLite consensus disorder prediction 179 214 - -
Acco05g0479 483 SUPERFAMILY beta-beta-alpha zinc fingers 353 382 IPR036236 -
Acco05g0479 483 SMART c2h2final6 57 79 IPR013087 -
Acco05g0479 483 SMART c2h2final6 137 159 IPR013087 -
Acco05g0479 483 SMART c2h2final6 355 377 IPR013087 -
Acco05g0479 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Acco05g0479 483 MobiDBLite consensus disorder prediction 158 214 - -
Acco05g0479 483 MobiDBLite consensus disorder prediction 373 483 - -
Acco05g0479 483 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Acco05g0479 483 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 15 476 IPR044653 GO:0003700
Acco05g0479 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 164 IPR013087 -
Acco05g0479 483 MobiDBLite consensus disorder prediction 373 406 - -
Acco05g0479 483 MobiDBLite consensus disorder prediction 1 25 - -
Acco05g0479 483 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0479 Acco-ChrAcco05 6237084 6238535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0479 58 186 C2H2 Transcription Factor Family AT2G26940 31.783 1.26e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g0479 zf-C2H2_6 9.3e-09 CL0361