Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0475 ATGCCAAAGAAAGATCTCATTTCCTGTTTCCACACTCACTCGGCGAGTCGGCGTCACTCTTCGTCTATCGCTCCCTCTGGGGGCTGGGAATCTTGTGCTTCTCTGTTCTCAATTCTCGTGCTTGTCTCTTTTCATTCCACTCTATTACATGGATCAAATGATTCGTTGATTCTCTGTTCAAAGGCCTCGGTGACAATACCTCAGGCTGTCAAAGGTTCAGGGAATCACTTTTACTCTGGTGTGTTTATGGCTGTCATTTTCAGTCCTCGCTTCAGCTTTTATCTGCAGACTTACCATTTTAAAGTCTGGAAAAACAGCAAGATGTCAAGTGGACCAACACATTGGTGTTATGAGTGTCGACTTCCAGTTGCACTTGAAGGCGGTGAGGTCATCTGCCCTTACTGTCATGAAGGCTTTGTGCAAGATCTCAATGAGAGGCATGAGTTTCAACCATATAATGCCCTTCAAGAGTTTCATCATATGCCTGGTTTTTTCGATGCTGTACATGCCTTTAGGGCGCTGAGAGCTTCTGAACCAAGCTCTGGCCTCATAAGTGCTTTTGACAATTTCTTGAGGCAGAGAATAGCTGGGCAAGACCCCAACATTGGTGTTAGACAAAGGTCTGATAACGCGCAATTTCCTGAATGGAGTCGAGATTTTTTCGATTCTGGCCCTTCTTTCATTTTTCCTGGTAGTGGAGTGGAACCTAGGCCAATTGATTTTGGTGGTTTATTGATGGCCCCTGGACTAGAGGCATTTATTCAACAGCTCACCATGAATGATCATAGAGGCCCTCCTCCAGCCTCCCATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACGAGCGCATCTTCGCTCTGATTCACACTGTCCGGTCTGTCAAGAAAAATTCGAGCTTGGCTCTGAGGCTAGGCAAATGCCTTGTAACCATATCTATCACTCAGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCTTGTCCTGTTTGCCGTGTTGAGTTGCCGTCTCCAGGACAGGGTAGTTCCCGTGGTGGTAGCAGCAATAACCGTGATAGCTCAAGAAGACTGAACCAGGGAAGGAGAAATCCACGATCAACTTGGTGGCCGTTTTGA 1119 0.4602 MPKKDLISCFHTHSASRRHSSSIAPSGGWESCASLFSILVLVSFHSTLLHGSNDSLILCSKASVTIPQAVKGSGNHFYSGVFMAVIFSPRFSFYLQTYHFKVWKNSKMSSGPTHWCYECRLPVALEGGEVICPYCHEGFVQDLNERHEFQPYNALQEFHHMPGFFDAVHAFRALRASEPSSGLISAFDNFLRQRIAGQDPNIGVRQRSDNAQFPEWSRDFFDSGPSFIFPGSGVEPRPIDFGGLLMAPGLEAFIQQLTMNDHRGPPPASHSSIDAMPTIKITRAHLRSDSHCPVCQEKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRVELPSPGQGSSRGGSSNNRDSSRRLNQGRRNPRSTWWPF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0475 372 MobiDBLite consensus disorder prediction 337 372 - -
Acco05g0475 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 193 337 - -
Acco05g0475 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 339 IPR013083 -
Acco05g0475 372 SMART ring_2 292 332 IPR001841 -
Acco05g0475 372 MobiDBLite consensus disorder prediction 341 372 - -
Acco05g0475 372 Pfam Ring finger domain 291 333 IPR001841 -
Acco05g0475 372 SUPERFAMILY RING/U-box 272 339 - -
Acco05g0475 372 Pfam zinc-ribbon 113 142 IPR039525 GO:0061630
Acco05g0475 372 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Acco05g0475 372 CDD RING-H2_RNF126-like 292 333 - -
Acco05g0475 372 FunFam E3 ubiquitin-protein ligase RING1-like 255 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0475 Acco-ChrAcco05 6174815 6178659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0475 217 372 C3H Transcription Factor Family AT1G68180 35.849 2.63e-24 98.2