LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g0405	ATGACAGTCATGGAAGAATCAGGCGAATTGCAATCGGAAGAGAATAAAGTTTCTATCGAGAAAAATAGGAAAAGGAGGCTTAAAACACCAGCCCAGGTGATGGCCCTGGAAAAATTTTATGATGAGCACAAATATCCCACAGAAGAAATGAAATCGGAACTTGCTGAGGAGTTAGGCTTGACTGAAAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGCTGAAAGATGAAACTTGTGCTAATGGGCGACAAGATCGCTCAAGTGGCGTTGTCCAGGACCATGTTAGTGGACTAAGGCAAGATTCATGTGGAAGCACTAAACATGGTGATAATAAGCATCTTGATCTGAAAGAGGTTGAGAGTCATGGCTTCTATGGCAATGACTTTTCTGTTGCAGATATGACATATGAACGTAATAGAGATTATAATGAAGATGTTGATGGAATGGATAACACATCTTCTGAGAGTAGCTCATCTTTACAAGATCAGTTGTTCTCTCAAGGTCAGGATCCATATAATATGGAGCCTTCTAGATATCTGACACCTAACAGAGCTCTGCCACCTTTGGTTCCCAAAGCTGCAATTAACATAGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTACTATAACTGCTGTCAAGAAGCAATTAGGAAGGAACTATAGGGAAGATGGTCCCCTTCTTAGTGTGGAATTTGATCCAGTTCCTCCTGGGGCTTTTGAGTGCCAAATTGCAGCAGATCCAGTTGATGAATCATTGCAATTCCATACTGTGAATCCTTCTCTTCCCAGTCCTCCAGAAATTTCTGCCGTGAAAAGGCAACCTGCCCTTAACTCTAGGTATGACTCCAAATATGGTTCCCATGATTTAGATATGGAAGTGGGAGAACTTGGCTCCTTGCATGACACTGACTTGCTGGATAGAAAACCTCGCCAGCACAAGCAAGGGCGGATGTTTCAGAGTTATACCAATCATTTACCTCATAGGAACTCGCCCCTGGAGTTGTATGAAGATCCCACTGGAGCAGTGCCTGCCTATAATACAATGGGCTCTAAGCACGGTGAAGGGATGAGATCTGATTCCGCTTCTTACCAGAGTGATCACTTTGAAGAGGACCTTGTGGCTAAGCAGATAGATTCACTTCTGCATTGCTATGATGATGTCAATCCAAAGAAAATTCAGAGGAGTGAGCATATAAAATCTAAGCCTTCAAAGTCATCAAAAAATTCTCGCATTTCTCTTGATACTGAAGAAAGAGGACTATCTTCAAGGATAGCAAAGGAAGAGAAGTTTGGTGGGGGCAAGAAGGCAAGAAAACAATACCATGATTCAGAGAGAATAAAGATTCTTCCAAATGAAACCATGATTGCAAAAAGAGTTAAAGATGATCTTCCTCAACAACAAAATCTGAAACATGCACTAGTAGCTGAGATGCAACCTCAGAAAAATCGGAGGTCTGCAACAGAGATACTTTCTAGCTTTAGTGAGGATGAAACCGCTGAAACCAGTTATTCGCTGGACTAA	1560	0.4135	MTVMEESGELQSEENKVSIEKNRKRRLKTPAQVMALEKFYDEHKYPTEEMKSELAEELGLTEKQVSGWFCHRRLKDKRLLKDETCANGRQDRSSGVVQDHVSGLRQDSCGSTKHGDNKHLDLKEVESHGFYGNDFSVADMTYERNRDYNEDVDGMDNTSSESSSSLQDQLFSQGQDPYNMEPSRYLTPNRALPPLVPKAAINIGYKPSGYLKVKGEIENATITAVKKQLGRNYREDGPLLSVEFDPVPPGAFECQIAADPVDESLQFHTVNPSLPSPPEISAVKRQPALNSRYDSKYGSHDLDMEVGELGSLHDTDLLDRKPRQHKQGRMFQSYTNHLPHRNSPLELYEDPTGAVPAYNTMGSKHGEGMRSDSASYQSDHFEEDLVAKQIDSLLHCYDDVNPKKIQRSEHIKSKPSKSSKNSRISLDTEERGLSSRIAKEEKFGGGKKARKQYHDSERIKILPNETMIAKRVKDDLPQQQNLKHALVAEMQPQKNRRSATEILSSFSEDETAETSYSLD	519

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Acco05g0405	519	MobiDBLite	consensus disorder prediction	89	110	-	-
Acco05g0405	519	SMART	HOX_1	21	83	IPR001356	GO:0003677
Acco05g0405	519	MobiDBLite	consensus disorder prediction	9	23	-	-
Acco05g0405	519	CDD	homeodomain	23	78	IPR001356	GO:0003677
Acco05g0405	519	MobiDBLite	consensus disorder prediction	405	435	-	-
Acco05g0405	519	ProSiteProfiles	'Homeobox' domain profile.	19	79	IPR001356	GO:0003677
Acco05g0405	519	SUPERFAMILY	Homeodomain-like	21	87	IPR009057	-
Acco05g0405	519	Pfam	Homeodomain	23	78	IPR001356	GO:0003677
Acco05g0405	519	Coils	Coil	517	519	-	-
Acco05g0405	519	MobiDBLite	consensus disorder prediction	148	174	-	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g0405	Acco-ChrAcco05	5035036	5042299	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g0405	6	519	Homeobox Transcription Factor Family	AT4G03250	39.633	4.60e-76	246

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-other	Acco05g0405		Homeodomain	7.7e-18	CL0123

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco05g0405	05	5035036	5042299	Acco05g0405	05	5035036	5042299	ECH

Showing 1 to 1 of 1 entries

Previous1Next