Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0402 ATGTCGCGGACTGATAGAATGATGTCGGATCTCAACAAAACTGGCCCTGTGGAAAGAGACACTGAGCAGGCCATTACCGCTTTAAAGAAAGGGGCTTGCTTGCTCAAGTACGGAAGAAGGGGGAAGCCAAAGTTTTGTCCCTTCCGCCTCTCAAATGATGAATCTCTTTTAATATGGTTCTCAGGGAAGGAGGAGAAACACCTTAAACTTAGCCAAGTTTCTAGAATTATCTCTGGACAGCGCACACCAATCTTTCAAAGATACCCACGGCCAGAAAAGGAATACCAGTCATTTTCCCTTATCTACAATGATAGGTCACTGGATTTGATTTGCAAAGATAAAGACGAGGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATATCACGTAGCCATCACCAGAAGTGGAGAACAGAATCAAGAAGTGATGGCATTCCTTCGGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTAAGTTCTCCATTTGGTAGTAATGAAAGCTTACAGAAGGATAGCGGAGATCACCTTCGCCTTCATAGCCCTTATGAGAGTCCCCCAAAGAATGGTTTGGATAAAGCATTATCTGATGTGATTTTGTTTGCTGTTCCTCCAAAGGGATTCTTCCCTCCAGATTCTGCCAGTGGTTCAGTGCATTCTGTGTCCTCAGGAGGATCCGATAGTGTACTTGGTCATATGAGGACAATGCCTATGGATGCCTTTAGAGTTAGTCTTTCTAGTGCTGTCAGTTCATCCAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTGGGAGATGTTTTCATTTGGGGAGAGGGCACAGGTGATGGTGTTTTGGGTGGTGGGACTCACCGAGTTGGTGGTAGTTTTGGTGTAAAAACAGATTCTTTATTGCCCAAAGCCTTGGAATCTGCAGTAGTACTTGATGTGCAGAATATTGCTTGTGGTGGACGGCATGCAGCCTTAGTGACTAAGCAAGGGGAAATTTTTTCATGGGGTGAAGAATCAGGAGGTAGGCTTGGACATGGTGTTGATTCTGATGTCCTTCATCCAAAGCTTGTAGAAGCTCTAAGTAATACAAATATTGAACTTGTTGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACCTACAATTATGGTCTCCTTGGGCACGGAAATCAAGTGAGTCACTGGGTCCCCAAAAGAGTAAATGGACCCTTGGAGGGCATGCATGTTTCATCTATTTCATGTGGACCATGGCATACTGCAGTTGTAACCTCTTCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTTGGTCATGGGGACCGAAAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACTGTGCGTGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTAGTTGAAGTCATGGTTGGAAATTCAAGTTCCAGCAATTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAGGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGCGTTGCAGCTCTTGTCGAGCCCAACTTTTGTCAAGTTTCTTGCGGACATAGTCTGACTGTTGCACTTACTACACAGGGCCATGTTTATACAATGGGTAGTCCTGTCTATGGTCAGTTGGGAAATCCCCAATTTGATGGGAAGCTACCAACACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCTGTTTTAACTTCAAGGACTGAGGTTTACACTTGGGGCAAGGGCATGAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATACCCCGACATTAGTTGAAGCTCTTAAAGACAAGCAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACTGCAGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGTCTGCCATTCAATTTTAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTGTCTGAAAGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTCAATAAACTAAAAAAAGCTATTGAAACTGATTCTTCATCTGTGAGCAGAAGAGGAAGTATCAATCAGGGATCATTGGAGTTTATTGACAAGGATGATAAGTTGGATTCTAGATCTCGTAATCAACTTGCAAGATTCTCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGTGTCTCACCTGCTCCAAATGGAGGCTCCCAGTGGGGAGCATTGAATATTTCTAAATCTTTCAATCCTGTTTTTGGATCGTCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGAGCAACATCCCCCATTTCTAGACGGCCCAGTCCACCACGTTCAACTACTCCAACCCCAACACTGGGGGGACTTACCTCCCCAAAGATTGGGGGGGATGATGCTAAGAGGACAAATGATAGCCTCAGTCAAGAGGTTGTTAAATTAAGAGCGCAGGTGGAAAATCTTACTCGCCAAGCTCAACTTCAGGAAATTGAATTAGAAAGAACAACTAAACAGCTGAAAGAAGCAATAGCCATTGCTGGTGAAGAAAGTGCTAAATGTAAAGCGGCAAAGGAAGTGATCAAGTCACTCACTGCTCAGTTGAAGGAAATGGCTGAGAGGCTTCCTGTTGGAGCAGCAAGGAACGTCAAATCACCATCTGTTGCATCTTTTAGTTCCAGTCCTGGTTCCAATGATGTTAGCAATGCTTCTGTTGAGCGATTGAATGTTCGGGCTACTAGTTTAGAACCGGACTTGACGGGATCAAATAATCAATCACTGACAAATGGATCAAGCACCATCAATAACCGTATTGCAGGTCACTATAAACTGAGCAACTCAGATGCATCAGGCAGAAATGGAAGTAGAACAAAGGAAAGTGATTCTAAAAACGAGAATGAATGGCAACAGCAGGATGAAACTGGTGTATTTATCACACTTACTTCCCTACCAGGAGGTATAATAGGTCTGAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTCAAAGACAGGCAGAACAATGGTGGGCTGAGAATTGTGCACGTGTGTGTGAACAATACAACGTGCGCATCGACAAATCGGCTGTTGGTATGGGGAGTGAAGACCTGGCTCATTGA 3315 0.4365 MSRTDRMMSDLNKTGPVERDTEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESLLIWFSGKEEKHLKLSQVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHQKWRTESRSDGIPSEANSPRTYTRRSSPLSSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALSDVILFAVPPKGFFPPDSASGSVHSVSSGGSDSVLGHMRTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHRVGGSFGVKTDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLVEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVSCGHSLTVALTTQGHVYTMGSPVYGQLGNPQFDGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGMNGRLGHGDTDDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKCLKASMAPNPNKPYRVCDNCFNKLKKAIETDSSSVSRRGSINQGSLEFIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIGGDDAKRTNDSLSQEVVKLRAQVENLTRQAQLQEIELERTTKQLKEAIAIAGEESAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVKSPSVASFSSSPGSNDVSNASVERLNVRATSLEPDLTGSNNQSLTNGSSTINNRIAGHYKLSNSDASGRNGSRTKESDSKNENEWQQQDETGVFITLTSLPGGIIGLKRVRFSRKRFSQRQAEQWWAENCARVCEQYNVRIDKSAVGMGSEDLAH 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0402 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Acco05g0402 1104 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Acco05g0402 1104 FunFam Putative E3 ubiquitin-protein ligase HERC1 663 731 - -
Acco05g0402 1104 SUPERFAMILY FYVE/PHD zinc finger 657 728 IPR011011 -
Acco05g0402 1104 Pfam Transcription factor BRX N-terminal domain 915 948 IPR027988 -
Acco05g0402 1104 MobiDBLite consensus disorder prediction 135 191 - -
Acco05g0402 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Acco05g0402 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Acco05g0402 1104 MobiDBLite consensus disorder prediction 979 1036 - -
Acco05g0402 1104 ProSiteProfiles BRX domain profile. 1032 1087 IPR013591 -
Acco05g0402 1104 Pfam Unstructured region between BRX_N and BRX domain 956 1025 - -
Acco05g0402 1104 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Acco05g0402 1104 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Acco05g0402 1104 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Acco05g0402 1104 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Acco05g0402 1104 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Acco05g0402 1104 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Acco05g0402 1104 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Acco05g0402 1104 FunFam PH, RCC1 and FYVE domains-containing protein 1 491 662 - -
Acco05g0402 1104 Pfam Transcription factor regulating root and shoot growth via Pin3 1031 1086 IPR013591 -
Acco05g0402 1104 MobiDBLite consensus disorder prediction 979 1019 - -
Acco05g0402 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Acco05g0402 1104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 729 IPR013083 -
Acco05g0402 1104 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Acco05g0402 1104 MobiDBLite consensus disorder prediction 1020 1034 - -
Acco05g0402 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Acco05g0402 1104 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 936 - -
Acco05g0402 1104 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Acco05g0402 1104 Gene3D - 19 137 IPR011993 -
Acco05g0402 1104 SUPERFAMILY RCC1/BLIP-II 267 658 IPR009091 -
Acco05g0402 1104 Coils Coil 864 905 - -
Acco05g0402 1104 Gene3D - 499 668 IPR009091 -
Acco05g0402 1104 Gene3D - 249 498 IPR009091 -
Acco05g0402 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Acco05g0402 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 436 485 IPR000408 -
Acco05g0402 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Acco05g0402 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 553 601 IPR000408 -
Acco05g0402 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 500 549 IPR000408 -
Acco05g0402 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Acco05g0402 1104 SUPERFAMILY PH domain-like 20 128 - -
Acco05g0402 1104 CDD PH_PLC_plant-like 19 129 - -
Acco05g0402 1104 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 490 - -
Acco05g0402 1104 MobiDBLite consensus disorder prediction 143 173 - -
Acco05g0402 1104 MobiDBLite consensus disorder prediction 764 801 - -
Acco05g0402 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Acco05g0402 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Acco05g0402 1104 MobiDBLite consensus disorder prediction 832 871 - -
Acco05g0402 1104 CDD FYVE_like_SF 666 719 - -
Acco05g0402 1104 MobiDBLite consensus disorder prediction 787 801 - -
Acco05g0402 1104 Coils Coil 920 940 - -
Acco05g0402 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
Acco05g0402 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Acco05g0402 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Acco05g0402 1104 SMART fyve_4 655 724 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0402 Acco-ChrAcco05 5008863 5016836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0402 924 1095 Major Intrinsic Protein MIP AT1G31880 34.637 3.96e-14 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g0402 05 5008863 5016836 Acco05g0402 05 5008863 5016836 ECH