Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0387 ATGGCTTTCTTCAGGAACATTTCAAATGAAACAGTTTCACACAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGGATCCACAAATCAGTTGGCAATGAATGTGGTGAGGCATCTTCAAGTGAGAAAGAGTTTGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGGCAGACTGCAAAATGAGGCTACGGGCGATGGAGGTGGTAACATTCAGTCTACTGTAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGACCCATCAGAATGGGCAGGAATATGGGCAAGAATCACAAAGTGGATCAGATTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCAGATGGAAGAGGGGAAAGATTAGATTCGGAAGATGATGATGGACAGAAAGAAGCAGGAAAAGGTCCTAGAGTCCATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGGATTCATCAACCGACTGGATCAAGTTCGTGGCCTCATCAGATGTCTAATGTTGTCAATAGTCGTGCAAATAGGAATTCTAGAATTTCAGATGATGTTGAAGATGATGATGGTGATGATGATAATGACGATGGTGATGCTGACTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGTGGACTTTGAGCCCGCCACAAGTGGTCGTTCTGCTAACAAGGATAGAGGTTGGGAGGGTGAAGAATCAGATGATGATAGTGATGATAATCTGGATGTTTCAGATGACGATGGTACTTACTATGCAAGAAAACCTGTGGGTAGGCAACGTGGCAAAGTGGGAAGAACTGTAAAACCTACTAGAGAACGCAAATCATTTGGGGCATCTGGTAGGCAAAGAAAACCTAAAATTTCTTATGAAGAGGATGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTCAAAAGCATGAGAAAGAGAGGTGCAAATGCTCGCAAGAACAATGGCCGGTCTTCTGCAGCTGCAGGTTTTTCTGGCCGGAACAGTGAGGTTCGCACATCTAGTAGAGCAGTTAGGAGGAAGGTGTCATATGCTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGTGAAGAAGAAGAAATCTCAAAAAGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGATGAGGCGCAGAGGAATAATAGATCGACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGTACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAGTCATTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATACGAAGAAAGTGACGGAGGACATCAGGTACAGGAACACAATCTCAAGAGAAGAGATTGAAGTCAATGATGTGAGTAAGGAAATGGATTTAGATATTATCAAGCAAAATAGCCAGGTGGAGAGAATCATTGCAGATAGAATCAGCAAAGATAATTCTGACAATGTTATTATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACATGGGAGAAGGACACAGATATTGCTTTTGCTCAGCATGCTATTGATGAGTACAAGGCTCGTGATGCAGCAATGTCAGTTCAAGGAAAGATGGTAGATCTACAACGCAAGAAAAGTAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAGTGGTTGAAGGGTGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGTCTGGGCAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCTTTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCAGGGCGAGAGGTTTGTCAACAGTATGAATTTTATAACGATAAAAAGGTTGGCAGACCTATAAAATTTAATGCCCTTTTGACTACTTATGAAGTGGTTTTGAAGGATAAAGCGGTTCTCTCCAAGATTAAATGGAATTATTTGATGGTTGATGAGGCTCATAGACTGAAAAATAGCGAGGCTCAGCTGTACACTACACTTTCAGAATTTAGCACCAAGAATAAATTGCTTATCACTGGCACTCCACTACAGAACAGCGTTGAAGAGCTATGGGCTTTACTTCATTTCCTTGATCCTGATAAGTTCAAAAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCGTTCAATGAGAATGAGCTTGCCAATCTTCACATGGAATTGAGGCCTCACATACTCCGAAGAGTCATCAAAGATGTGGAGAAATCATTGCCCCCCAAAATTGAGCGGATACTCAGAGTTGAAATGTCTCCTCTTCAAAAACAGTATTACAAGTGGATTTTGGAGCGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAACTTGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGCCATACTTGATAAGCTACTTGTTAAATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGTTTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGACTTTTGCTTCCTTCTCTCAACGAGAGCAGGAGGCCTGGGTATCAATCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGATTGGAATCCCCAAAATGACCTCCAGGCCATGAGTAGAGCACATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTTTGACAAGCAAAAGTGTCGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTTGACCATTTGGTCATTCAAAAATTAAATGCGGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGTTTTTTTGACAAAAATGAACTGTCAGCAATTTTAAGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAGAAACGACTTTTAAGTATGGATATTGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGGGAGCAAGCGCATGAATTATTGAGTGCCTTTAAGGTTGCTAATTTGTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGAGGCAGTAGCCCAAGCTGAAGAAGCTTTGGTTCCACGTGCTGCAAGGAACATTAAAAGTTATGCTGAGGCCAACCAATCTGAAAGAAGTAGTAAACGAAAAAAGAAAGAACCTGAGCCTTTTGAGCGAGTTCAGAAGCGCCGAAAAGCAGAGTATTCAGCTCCTGCAATGCCAATGATTGAGGGAGCATCAGCACAAGTGAGAAGTTGGTCTTATGGAAATGTATCGAAAAGAGACGCACAAAGATTTTCTCGTGCTGTTATGAAATATGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTTAGTGGGGCATTTGCAGCTGCTCCGCCAGAAGCTCAGATTGAACTCTTCAATGCTCTAACTGATGGCTGTAAAGAAGCAGTGGAACTAGGAAGTATGGACCCTAAGGGACCACTTTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTACTTAACCGTGTTCAAGAACTCCAACTCTTGGCAAAGCGCATTAGTAGATATGAAGATCCCATTGCACAGTTTCGTGTTTTAACGTATCTTAAACCTTCAAACTGGTCTAAAGGTTGCGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTACCATGGATTTGGTAGTTGGGAAAAGATACGACTAGATGAAAGGCTTGGGCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCCAACTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTTGTTGTTCTTGGTTCTAAAAATGCCAGTAGTAAAGGGGGACGCAAGGCTTCCAAGAAGGAGAGGGAAAATCTTATTACCATGTCAGCAGCACGAGGGCCAGAGAAGGGAAAATTAAATTCTTCTAAAGTTACTGTCCAAATAAGAAAGGATAGACCCCTGAGGCCCCGGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCCGACAATGATGAAGTGTATGAGCAGTTCAAGGAAGTAAAATGGATGGAGTGGTGTCAGGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTGCATAGGTTGCAGACAACCAGCGCCAATCTCCCGAAGGAAAAGGTGCTTTCCAAGATCCGCAATTACTTACAGCTTCTTGGGCTGAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACCTTATAAGCAAGATAGGATGACTATGCGATTGTGGAACTACGTCTCTACTTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAGATCTATTCCAAACTTAAACAGGAGCAACAAGATGAGGCTGGGGTTGGCCCCTCTCACATCAATGGGTCAATATCTGGTCCATCCGGGAGAAACCACCCTCGCCATATGGAGAGACAAAGAGGATACAAAAATGTGACTTCATATCAAATGCCAGAACCAGTTCACAATGCAGGAAAATCTGTGGCTTGGAAACGAAGGAGAGGAGAAGGCGACAGTCATTTTCAAGGTCAGCCACCATCTCAGAGAGCTACGGGCAATGGAGTCCAAATATCTGATTCTAACTCACTGGGGATTCTTGGCGCTGGGCCCTCTGATAGACGTTTCATTAGCGAGAAACCTTACAGGACACGACCTGGTGGCGCTCCTCCAAGACATGGTTTCTCGTCCGGGATAAAGTAG 5238 0.421 MAFFRNISNETVSHSVLEEKGQGQNADRIHKSVGNECGEASSSEKEFDMNMDAQYHSDGEPDGRLQNEATGDGGGNIQSTVSKTAMVGRWGSTFWKDCQPMTHQNGQEYGQESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRVHSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQPTGSSSWPHQMSNVVNSRANRNSRISDDVEDDDGDDDNDDGDADYEEEDEADEDDPDDVDFEPATSGRSANKDRGWEGEESDDDSDDNLDVSDDDGTYYARKPVGRQRGKVGRTVKPTRERKSFGASGRQRKPKISYEEDESTAEDSESESDDDFKSMRKRGANARKNNGRSSAAAGFSGRNSEVRTSSRAVRRKVSYAESEESEEADEVKKKKSQKEELEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSNLFDSVPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSDNVIIEYLVKWQGLSYAEVTWEKDTDIAFAQHAIDEYKARDAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQYEFYNDKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLAILDKLLVKLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEQAHELLSAFKVANLCNDEDDGSFWSRWIKPEAVAQAEEALVPRAARNIKSYAEANQSERSSKRKKKEPEPFERVQKRRKAEYSAPAMPMIEGASAQVRSWSYGNVSKRDAQRFSRAVMKYGNESQIHLIAAEVSGAFAAAPPEAQIELFNALTDGCKEAVELGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGSWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGSKNASSKGGRKASKKERENLITMSAARGPEKGKLNSSKVTVQIRKDRPLRPRRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVLEHEEEPYKQDRMTMRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHINGSISGPSGRNHPRHMERQRGYKNVTSYQMPEPVHNAGKSVAWKRRRGEGDSHFQGQPPSQRATGNGVQISDSNSLGILGAGPSDRRFISEKPYRTRPGGAPPRHGFSSGIK 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0387 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 837 IPR027417 -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 98 415 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 1679 1745 - -
Acco05g0387 1745 CDD CD1_tandem 409 489 - -
Acco05g0387 1745 Pfam Chromo (CHRromatin Organisation MOdifier) domain 525 579 IPR023780 -
Acco05g0387 1745 Pfam SNF2-related domain 635 904 IPR000330 GO:0005524|GO:0140658
Acco05g0387 1745 SUPERFAMILY Chromo domain-like 503 579 IPR016197 -
Acco05g0387 1745 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 180 1694 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 124 162 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 352 371 - -
Acco05g0387 1745 Pfam Domain of unknown function (DUF4208) 1525 1617 IPR025260 -
Acco05g0387 1745 ProSiteProfiles Chromo and chromo shadow domain profile. 524 588 IPR000953 -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 1205 1232 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 298 325 - -
Acco05g0387 1745 SUPERFAMILY Chromo domain-like 408 491 IPR016197 -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 34 79 - -
Acco05g0387 1745 CDD CD2_tandem 522 578 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 372 415 - -
Acco05g0387 1745 FunFam Photoperiod-independent early flowering 1 586 860 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 264 278 - -
Acco05g0387 1745 Coils Coil 1076 1096 - -
Acco05g0387 1745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 800 IPR014001 -
Acco05g0387 1745 SMART DUF4208_2 1513 1618 IPR025260 -
Acco05g0387 1745 SMART chromo_7 522 581 IPR000953 -
Acco05g0387 1745 SMART chromo_7 409 492 IPR000953 -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 98 123 - -
Acco05g0387 1745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 936 1087 IPR001650 -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 214 245 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 1687 1711 - -
Acco05g0387 1745 Pfam Helicase conserved C-terminal domain 933 1046 IPR001650 -
Acco05g0387 1745 CDD SF2_C_SNF 923 1057 - -
Acco05g0387 1745 SMART helicmild6 962 1046 IPR001650 -
Acco05g0387 1745 FunFam Chromo domain-containing protein 1 399 524 - -
Acco05g0387 1745 Coils Coil 1129 1156 - -
Acco05g0387 1745 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 847 1077 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 1621 1648 - -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 182 207 - -
Acco05g0387 1745 Gene3D - 395 524 - -
Acco05g0387 1745 SMART ultradead3 612 811 IPR014001 -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 1210 1232 - -
Acco05g0387 1745 Gene3D - 607 846 IPR038718 -
Acco05g0387 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1121 IPR027417 -
Acco05g0387 1745 ProSiteProfiles Chromo and chromo shadow domain profile. 411 490 IPR000953 -
Acco05g0387 1745 MobiDBLite consensus disorder prediction 41 65 - -
Acco05g0387 1745 Gene3D - 1342 1453 - -
Acco05g0387 1745 Gene3D - 526 578 - -
Acco05g0387 1745 Coils Coil 388 408 - -
Acco05g0387 1745 Gene3D - 847 1077 IPR027417 -
Acco05g0387 1745 FunFam protein CHROMATIN REMODELING 5 isoform X2 526 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0387 Acco-ChrAcco05 4862809 4885132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0387 638 1073 RAD5 or RAD16-like Gene Family AT1G02670 26.139 2.14e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco05g0387 SNF2_N 1e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g0387 05 4862809 4885132 Acco05g0387 05 4862809 4885132 ECH