Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0381 ATGATCCGTACAATTTTCAGAAGATCTTGTTCCTTAGTCTCAAGGCGCGCTCTCGCTGCCTCCACGTTGATTGAGTATCAGCATCACCTCACCTCATCAGTCGCCGGGTATGGTGGTGTTTCCGGCACTGAGCTTCGGCCATTCTCCAACTTGTTTGGTTCTGGTGGGTTCAAGTCAAGCGCATTTCATTCCCAATCGGGGCCGTTGAATTTCCGGACGTCATTGATACCTCGTGCCGAGTACGCTGTTGATGATTACTCCTTTGAAGAACGCCCCAAGGGAAACAGTGATGATGGCCTTGATATTGCGAAGCTCGGTATTGCTCAGGATATTGTCTCTGCTTTGGCTAGGAGAGGTATAACGAAGCTCTTTCCTATACAGAGAGCTGTTCTGGAACCTGCCATGCAAGGTCGTGATATGATTGGCCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATGGACAAGATCATTCAATATAATGCTAAGCATGGACGAGGAAGGGATCCTCTTGCTCTGGCTTTGGCACCAACTAGAGAACTTGCCCGGCAGGTTGAAAAGGAATTCGCTGAATCAGCACCTAATTTGGATACAATTTGTGTTTATGGGGGAACACCCATTTCCAGCCAAATGAGGCAGCTTCAATACGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAACAGAGGCGCCCTGAATTTGAGAGACGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGATTTCAGGAAGATGTTGAAAAAATCTTGGAGGCGCTGCCTCCCAAACGCCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGATTTCTCGCAAATACTTAAATGATCCTGTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACATTATACTCAATTGCCTCAGATATGTATGGAAAAGCAGGAATTATTGAAAGTCTAGTAACTGAACACGCTAAAGGAGGAAAGTGTATTGTTTTCACCCAAACCAAACGTGATGCTGATCGACTATCATATTCCATGTCAAGAAGCCTCAAGTGTGAGGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTCAGAGAAGGCCATTTCAATGTTCTAGTAGCGACTGATGTTGCTTCGCGTGGGCTTGACATACCGAATGTTGACCTTGTAATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCGGGACGGACAGGTCGAGCTGGGAAGAAAGGAACTGCTATTCTTATTTACACTCAAGACCAAACCAGGGCTGTCAAGATTATTGAGCGTGATGTTGGCAGCAGATTTTCTGAGCTGCCGAGAATTGCTGTTGAAGGTGAATCAGTAGGTATGTTTAATAGCCAGGGTGGTGGTCGATTTAGCAATTTTGGAGGGGAAGGTTTGGTGGACCTAGTTCTGGTCGTTTCAGTGATGGTGGATCAAGTCAACCAAGAAGTGGGTTTGGGGGATCATTTGGTAATTTTTCAGGTGAAGGCTCGGGTCGATATGGTTCATCTGGTGGTTTTGGCTCTAGACCATCAGAGAGTGGCTTTGGCAGATCTAGCTTAG 1662 0.4519 MIRTIFRRSCSLVSRRALAASTLIEYQHHLTSSVAGYGGVSGTELRPFSNLFGSGGFKSSAFHSQSGPLNFRTSLIPRAEYAVDDYSFEERPKGNSDDGLDIAKLGIAQDIVSALARRGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQYNAKHGRGRDPLALALAPTRELARQVEKEFAESAPNLDTICVYGGTPISSQMRQLQYGVDIAVGTPGRIIDLLNRGALNLRDVQFVVLDEADQMLQVGFQEDVEKILEALPPKRQTLMFSATMPSWIRQISRKYLNDPVTIDLVGDSDQKLADGITLYSIASDMYGKAGIIESLVTEHAKGGKCIVFTQTKRDADRLSYSMSRSLKCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQTRAVKIIERDVGSRFSELPRIAVEGESVGMFNSQGGGRFSNFGGEGLVDLVLVVSVMVDQVNQEVGLGDHLVIFQVKARVDMVHLVVLALDHQRVALADLA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0381 553 CDD DEADc 111 306 - -
Acco05g0381 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 460 IPR027417 -
Acco05g0381 553 Gene3D - 320 478 IPR027417 -
Acco05g0381 553 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 100 481 - -
Acco05g0381 553 SMART ultradead3 119 322 IPR014001 -
Acco05g0381 553 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 305 IPR014001 -
Acco05g0381 553 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 478 IPR001650 -
Acco05g0381 553 Pfam DEAD/DEAH box helicase 124 291 IPR011545 GO:0003676|GO:0005524
Acco05g0381 553 CDD SF2_C_DEAD 341 448 - -
Acco05g0381 553 FunFam ATP-dependent RNA helicase RhlE 93 308 - -
Acco05g0381 553 Pfam Helicase conserved C-terminal domain 334 439 IPR001650 -
Acco05g0381 553 SMART helicmild6 359 439 IPR001650 -
Acco05g0381 553 Gene3D - 101 309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0381 Acco-ChrAcco05 4769020 4773076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0381 105 471 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 2.93e-71 232