Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0375 ATGAGGCTTTTTCCTTCAGGACTTGGTCAACCGGCTCAAGAAGGGGAAAAAAAAAGTTTAAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTGGTGTCTCTGCCACCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCATAGTGAGCAGGTTGCTGCTTCAACTAACAAGGAAGTAAATGCACATATTCCCAATTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGTGGAAACAGATGAAGTATATGCTCAAATGACTCTGCAACCTTTAAGTCCGCAAGAGCAAAAGGATATGTATCTACTGCCTGCAGAATTGGGTACTGCCAGCAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACAAGCACTCACGGAGGATTTTCTGTCCCTCGTAGAGCCGCTGAAAAAGTTTTCCCTCCTCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCAAGGGACCTTCATGATAATGAATGGAAATTCAGACACGTTTTTCGAGGTCAGCCAAAGAGGCATCTTCTAACTACAGGGTGGAGTGTTTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAGTTCCTCTTGGGAATCCGGCGAGCAAATCGTCCACAGACTGTCATGCCGTCTTCAGTTCTGTCAAGTGACAGCATGCATATAGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCGACAAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTCATTCCTTTAGCTAAGTATGTCAAAGCTGTATATCAAACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTTGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGCACTATAACAGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACACTGGCTTTCAGTGAAGGTTGGATGGGATGAGTCCACTGCTGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAGCCATTGACAACATTCCCTATGTATCCATCCCCGTTCCCATTGAGGCTGAAACGCCCTTGGCCATCAGGACTACCTTCTTTTGGTCTAAAGGATGGTGACATGAGCATTGTTTCTCCATTCACGTGGCTCCAAGGTGGGCTTGGGGATCCAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCGCCATGGATGCAGCCAAGACTTGATGCTTCTATGTCGAGACTTCAGCCAGAAATATACCAAGCAATGGCTGCTGCTGCACTTCAGGAGATGAGGGCAATGGGTCCGTCTAAGCCTTCTTCTGAATCTTTGCTGCAGTTTCAGCAGTCTTCAAATATTCCTGGTGCTCCTTCTTCTTGTATCCAGAGGCCAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTACAAAACTTTCAAGAAAACCAGATTCCTTCTCAGTCCTCCCTTCTGCAACGACAGTTGCAGCGTTACCATCCTTATAATGATCAGAGGTGGCAGCAGCAGCAGCAACCTAACAGCTTACCTGTTCAGCAGCAGATCTCTAACGTTGTCTCTCCTTTGTCTAATTTTGCATCATCTACCCAGTTTCTCTCTCCATCCATGCCAGCCATTGCTTCAAATTGCCAGCAGCAGAGTTTTCCAGAACCTTCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCAAAGTCTACTAGGATTCCCCCAGGATGCAGTATCCCAGTTACTTAACATGAATGCATCCAACTCTATGGTTTCTCCTACTTCTATACTACCCAAGCAAATAACTGTGGAACCTCAGCTTCAAACTGCTGCTGCTCAGTGTGTATTACCCCAGGTGGAAAACTTGGGAATGTCACACTCAAATGTATCTGAACTTCCTATTTTGCCTCCGTTTCCTGGAAGAGAATATTCTGCATACCAAGCTTCAAACTTTGCTGGTGCTACAGGGACTGATTATCATCCAAGTTCAGACATGACAACATCAAGTTGTGTAGATGAATCTGGCTTTTTGCAGTCTTCTGAAAATGTGGAGCAAGCAAATACATCAACTGGAACCTTTGTCAAGGTTCACAAGTCAGGGTGCTTTGGGAGGTCACTGAACATCTCTAAGTTTAGCAGCTATGATGAACTGCGTAGTGAGCTTGCTCGCATGTTTGGGCTTGAAGGCCAACTACAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTCCATCACGATTCTGTCTCCACTTGAAGTACAACAAATGGGCAGAGGAAGTCTTGGTCCCACAGCTTCTGCATTGGGCCACAAACTTTCTACCACTAGCAATGCTTGCGATAACTACACGAGTCAGACAAGAGATGAGAAATCCTGGTAA 2514 0.4598 MRLFPSGLGQPAQEGEKKSLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVNAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDMYLLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQFLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYQTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWLSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFGLKDGDMSIVSPFTWLQGGLGDPGMQSLNFQGLGVAPWMQPRLDASMSRLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNIPGAPSSCIQRPVLQQSQSQNVLQNFQENQIPSQSSLLQRQLQRYHPYNDQRWQQQQQPNSLPVQQQISNVVSPLSNFASSTQFLSPSMPAIASNCQQQSFPEPSRNQIPSSDVSAIQSLLGFPQDAVSQLLNMNASNSMVSPTSILPKQITVEPQLQTAAAQCVLPQVENLGMSHSNVSELPILPPFPGREYSAYQASNFAGATGTDYHPSSDMTTSSCVDESGFLQSSENVEQANTSTGTFVKVHKSGCFGRSLNISKFSSYDELRSELARMFGLEGQLQNPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWSITILSPLEVQQMGRGSLGPTASALGHKLSTTSNACDNYTSQTRDEKSW 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0375 837 SUPERFAMILY CAD & PB1 domains 704 789 - -
Acco05g0375 837 Gene3D - 709 802 - -
Acco05g0375 837 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Acco05g0375 837 Gene3D - 126 229 IPR015300 -
Acco05g0375 837 FunFam Auxin response factor 292 364 - -
Acco05g0375 837 FunFam Auxin response factor 708 802 - -
Acco05g0375 837 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Acco05g0375 837 SMART B3_2 128 230 IPR003340 GO:0003677
Acco05g0375 837 FunFam Auxin response factor 126 230 - -
Acco05g0375 837 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Acco05g0375 837 MobiDBLite consensus disorder prediction 452 471 - -
Acco05g0375 837 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 802 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco05g0375 837 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco05g0375 837 CDD B3_DNA 127 228 IPR003340 GO:0003677
Acco05g0375 837 ProSiteProfiles PB1 domain profile. 713 803 IPR000270 GO:0005515
Acco05g0375 837 Pfam AUX/IAA family 702 794 IPR033389 -
Acco05g0375 837 Gene3D - 292 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0375 Acco-ChrAcco05 4689419 4699357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0375 547 831 B3 DNA Binding Superfamily AT1G30330 44.315 3.71e-60 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco05g0375 AUX_IAA 4.9e-07 CL0072