LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g0348	ATGCAGGAATCAACAATGGCGAGGCGACCAAAACAGAAGAACAAGACACTGATCACAGACGCCAGAGCCAAGCATGTTGCTTTCTCCAAGCGTCGTCATTCTATCCTCAAGAAAGCCTTAGAGCTCTGTACCTTGTGCGCGGTGGAAATGGCAATCATCGTCTTCTCACCCGGCGGAAAACCCTACTCCTTTGGACATCCTTCCACTGAAGCAGTTCTCAACAGACTTGTCACTGCTGGTTCTTCTGCGAATCTGATGATGATCCGTCGTCGTAATTCTTCTTCTGATGATGAAGAAGACGAAGAAAGGGCCCGACAAGAAGCTATGATGGCGGAACTTAACAGACAGTACAGCGATCTGAATGCTCAGTTAAAAGAAGAGAAGAAAAGAGAGAAGGAGCTGAAGAAGAAGATGAAGAATCTTCCAGATATTGAAAAGATGAACAGAGATGAGCTGATAAAGATGAAGGCGTCGCTTGAAGATCTGAGAGTGAAAGTACAGAATCGTGAAGAGGAGATGTTGGCTGCGAAGACGACTATGGATGATGATCTGAGATTAACCTTAGGTGGTGTATATTCTGCAGGAGATCAAGCTTCTTCAAGCTCTGTGAAAACTCTTCGTGGTGAAGCTGGAGATGGAGATTTTTCTGCAAATATGGATGATGGTGATCTTAGTCTGAGTCTTTCAGCTTTTGTCCCCAAGTGA	705	0.4496	MQESTMARRPKQKNKTLITDARAKHVAFSKRRHSILKKALELCTLCAVEMAIIVFSPGGKPYSFGHPSTEAVLNRLVTAGSSANLMMIRRRNSSSDDEEDEERARQEAMMAELNRQYSDLNAQLKEEKKREKELKKKMKNLPDIEKMNRDELIKMKASLEDLRVKVQNREEEMLAAKTTMDDDLRLTLGGVYSAGDQASSSSVKTLRGEAGDGDFSANMDDGDLSLSLSAFVPK	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g0348	234	Coils	Coil	96	141	-	-
	Acco05g0348	234	ProSiteProfiles	MADS-box domain profile.	18	68	IPR002100	GO:0003677\|GO:0046983
	Acco05g0348	234	PRINTS	MADS domain signature	45	66	IPR002100	GO:0003677\|GO:0046983
	Acco05g0348	234	PRINTS	MADS domain signature	30	45	IPR002100	GO:0003677\|GO:0046983
	Acco05g0348	234	Coils	Coil	152	179	-	-
	Acco05g0348	234	MobiDBLite	consensus disorder prediction	193	234	-	-
	Acco05g0348	234	SUPERFAMILY	SRF-like	16	78	IPR036879	GO:0003677\|GO:0046983
	Acco05g0348	234	PANTHER	MADS BOX PROTEIN	12	168	-	-
	Acco05g0348	234	SMART	madsneu2	7	67	IPR002100	GO:0003677\|GO:0046983
	Acco05g0348	234	Gene3D	-	21	86	IPR036879	GO:0003677\|GO:0046983
	Acco05g0348	234	FunFam	Agamous-like MADS-box protein AGL62	20	85	-	-
	Acco05g0348	234	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	18	64	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g0348	Acco-ChrAcco05	4412412	4413116	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g0348	24	166	Type I MADS-box Gene Family	AT2G24840	39.869	2.54e-26	101

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Acco05g0348		SRF-TF	6.5e-19	No_clan