Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0332 ATGAAGGAGAGACAACGTTGGACAACTGAAGAGGATGCTTTATTATGTGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCCCAACGCATGAACAAACCTCTTAACAGGGATGCCAAATCCTGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAGGGTTCCCTAACTGAAGAAGAGAAATCTCTTGTCATCCGTCTTCAACAGATTTACGGCAACAAATGGAAGAAAATTGCTGCAGAAGTCCCAGGTCGTACTGCTAAGAGATTAGGTAAGTGGTGGGAAGTATTTAAAGAGAAGCAGCAGAGGGAAAAAAAGGATATCAACAAAACAGTTGACCCAATTGATGACACCAAATACGGTCATATACTTGAGACTTTTGCAGAAAAGCTCGTGAAAGAACGACCTTCCCCATCCTACCTCATGGCTGCCTCCAGTGGGGCCTTTATTCTCACTGATGCACCGGCTCCTCCATCAGCTATGCTTCCTTCTTTACTTTCAAATTCTAACAGCACTTCAGCTATTAGGCCACCTTCTCCTTCTGTGACGCTTAGTCTCTCTCCCTCAACTGTTGCTGCTTCTCCTCCATTTCGATGGTTACAACCTGAGAAAATAACTGAGAATGTTTCTCCTGTTATTGGGAATGTAAAATCTCATGCAACTATTCCAGGTTTTGGTGCTAACATACTTATATCTGAACTGGTTGAATGCTGTAAAGAATTGGAAGAAAGGCACCGGGTGTGGTCACTGCATAGGAAGGAAGCAGCATGGAGGTTAAGGCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCATGTCGTATCCGGGAGAAGATGGAAGAGTTTGAAGCTAAGATCAAAGCTCTTTGGGATGAAAAGATGGCTGCTTTGGAGAGAATGGAAACTGAATACCAGGAGCAGCTAGCTGAACTGAGAAGAGATGCGGAAACCAAGGAGCAGAAATTGGCCGCAAAGCACTCAAGGCTAAGTAAGTTTCTGGAACAAATAGGTTACGGGCCCAAGCTTGCTGAGTCAAATGTAAGATGA 1062 0.4463 MKERQRWTTEEDALLCAYVKQYGPREWNLVSQRMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEKSLVIRLQQIYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKDINKTVDPIDDTKYGHILETFAEKLVKERPSPSYLMAASSGAFILTDAPAPPSAMLPSLLSNSNSTSAIRPPSPSVTLSLSPSTVAASPPFRWLQPEKITENVSPVIGNVKSHATIPGFGANILISELVECCKELEERHRVWSLHRKEAAWRLRRVELQLESEKACRIREKMEEFEAKIKALWDEKMAALERMETEYQEQLAELRRDAETKEQKLAAKHSRLSKFLEQIGYGPKLAESNVR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0332 353 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Acco05g0332 353 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Acco05g0332 353 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 348 - -
Acco05g0332 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Acco05g0332 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Acco05g0332 353 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Acco05g0332 353 CDD SANT 6 53 IPR001005 -
Acco05g0332 353 SMART sant 3 55 IPR001005 -
Acco05g0332 353 SMART sant 58 106 IPR001005 -
Acco05g0332 353 Coils Coil 299 333 - -
Acco05g0332 353 Gene3D - 4 58 - -
Acco05g0332 353 CDD SANT 63 104 IPR001005 -
Acco05g0332 353 Gene3D - 62 119 - -
Acco05g0332 353 Pfam Myb-like DNA-binding domain 7 69 - -
Acco05g0332 353 FunFam MYB-related transcription factor 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0332 Acco-ChrAcco05 4223226 4224287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0332 1 340 MYB Transcription Factor Family AT2G37630 62.778 8.86e-145 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g0332 Myb_DNA-bind_6 8.7e-15 CL0123