Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0306 ATGGAGGAGGAACTAGAAATTCTATGTCCTCCATGGTCGCCCTCTAGCGCCTCCCTCCCTACTCTCTTATCTTATCTTCTCCAGGTACCACAAAGTGATTCTATGGAGTCAGAGGACAATCATTTTTTGGATTCTAAGCCAGCCTGTGGGTCAGCAGGTCCTTCTGGGATCTCTCCACTTAATGTTGCTAAAAAAGTGGAAACCAATGCTTGGGGGATACCGCATGGGGCTGGTGCACATCATGCATCTAATGACACTAGCTTGTTTTCTAGTTCTCTGCCTGTTCTTCCACATGAAAAGTTGAATTTCCCTGATTCAGTGCGTTATGGCCAACCTTTTGATGATAACATGCCAATGCTTAATCAAGACCACAAAGAAGTTGAGGGGTATGATCCACTTGAAGATGTGGAAACCAATGCTATTGGAAACATACTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATATGGACGAAAATGATTTGTTTGGTAGTGGAGGAGGGTTAGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGAATGTCAAAGATGAGCATTACTGATGGAGTTACTTCAAACGGTATTGGCCATTATGTACTTCCAAATGGTGTAGGACCTGTGGCTGGGGAGCATCCTTATGGAGAACATCCATCGAGAACATTATTTGTGAGAAACATTAATAGTAATGTTGAGGATTCTGAATTAAAATCACTATTTGAGCAATATGGGGATATTAGAACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTACGATATTCGAGATGCTCGTACTGCAATGCGTGCTTTACAGAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCTTCTGAGAAAGACATCAACCAAGGAACTCTTGTTGTGTTCAATTTGGATCCATCAGTATCAAATGACGATCTTCGTCTAATATTTGGGGCTTGTGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACATCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCAGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCTAGCCGCCCTGGTGGGGCGAGAAGAAATTTGATTCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCACGGACTTTTAGACATCAAGTAGGCTCACCAATGGCCAATTCTCCTCCGGGTAACTGGGCACAATTTGGCAGTCCAGTTGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCTGTAAATAGCAACCATTCATCTGGATTGGCCGCAATTCTTTCCCCTCATGCATCAAACTCTACAAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAGTTCAAATCAGATATTTACAAATGCAGTATCAACTCAAGGAGTAGCTTTTCAGAATTCACTGTCCTTTCCCGAGCTAAAAGCGAAGGCAAGTTCTAGACCCATTACAACTTTCGGTGAATCAAGCTCAACTTCATCAAGCATTGGAACCCTATCTGGTCCTCAATTTCTTTGGGGAAGTCCACCTACTTCTTACACAGAGCATTCAAACACTTCTGCTTGGTCGTCTTCTTCTGCTGGGCTCCCTTTTACATCTAGTGGTGAGAAGCAGGGTTTCCCATATACTAATAGACACAATTCCTTTCTTGGTACCCGCTCCCATCATCATGTGGGATCTGCTCCTTCTGGCCTTCCTCTTGATAGGCATTCAAGCTATTTCCCAGAGTCCCCAGAAACTTCTTTCATGAGTCCAGTTTCATATGGGAGTATAAATCACAGTGATGGGAGCTTTATGAACATGGGTGCTCATGCGGCTACTGGGGTTATTGGTCTTTCAGGAAATACAACTGAAATGAGTTCACCTAATTTCAGGTTGATGTCACTGCCCAGGCATAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTGGAGTGGTTGCAAATAATGAGGGGTTTATCGAGCGTGGTCGGAATCGGCGACCTGAAAATAGTGTGACCCAAATTGATAGCAAGAAGCAGTATCAACTTGATCTAGACAAAATTATCAGTGGGGAAGATACAAGAACTACTTTAATGGTTAAAAACATCCCTAATAAGTACACCTCAAAGATGCTGCTGTCTGCAATTGATGAGAACCACCGGGGCACTTATGACTTCCTCTACTTGCCCATTGACTTTAAGAACAAATGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTGCTTCACATATTGTTCCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCATTGGCTTATGCACGGATCCAGGGAAAGGCAGCACTTGTTACACACTTTCAAAATTCAAGCTTGATGAACGAGGATAAGAGATGCAGGCCTATTCTCTTTCATTCAGAGGGCCAAGAGATTGTTGATCAGGAACCTTTCTTATCGAGCAATTTGAATATTTGCATCCGGCAACCAGATGGGTCATACTCAGGCGATTTGTTGGAAAGCCCGAAGGGTGATTTGGATGACAGGCTGTAG 2652 0.4219 MEEELEILCPPWSPSSASLPTLLSYLLQVPQSDSMESEDNHFLDSKPACGSAGPSGISPLNVAKKVETNAWGIPHGAGAHHASNDTSLFSSSLPVLPHEKLNFPDSVRYGQPFDDNMPMLNQDHKEVEGYDPLEDVETNAIGNILPDDEEELLAGIMDDFDLSRLPSQLEDMDENDLFGSGGGLEMDFEPQESLKIGMSKMSITDGVTSNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELKSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGACGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLIQQLSQELDLDEARTFRHQVGSPMANSPPGNWAQFGSPVEHSYLSSFSKSPVNSNHSSGLAAILSPHASNSTKIAPIGKDSGRVNSSNQIFTNAVSTQGVAFQNSLSFPELKAKASSRPITTFGESSSTSSSIGTLSGPQFLWGSPPTSYTEHSNTSAWSSSSAGLPFTSSGEKQGFPYTNRHNSFLGTRSHHHVGSAPSGLPLDRHSSYFPESPETSFMSPVSYGSINHSDGSFMNMGAHAATGVIGLSGNTTEMSSPNFRLMSLPRHSSLFLGNGSYSGVVANNEGFIERGRNRRPENSVTQIDSKKQYQLDLDKIISGEDTRTTLMVKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFLSSNLNICIRQPDGSYSGDLLESPKGDLDDRL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0306 883 SUPERFAMILY RNA-binding domain, RBD 233 396 IPR035979 GO:0003676
Acco05g0306 883 SMART rrm1_1 322 390 IPR000504 GO:0003723
Acco05g0306 883 SMART rrm1_1 237 305 IPR000504 GO:0003723
Acco05g0306 883 SMART rrm1_1 728 804 IPR000504 GO:0003723
Acco05g0306 883 SUPERFAMILY RNA-binding domain, RBD 728 813 IPR035979 GO:0003676
Acco05g0306 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 309 IPR000504 GO:0003723
Acco05g0306 883 Pfam RNA recognition motif 2 726 822 IPR007201 -
Acco05g0306 883 CDD RRM1_MEI2_like 235 311 IPR034453 -
Acco05g0306 883 PANTHER RNA RECOGNITION MOTIF-CONTAINING 63 843 - -
Acco05g0306 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 302 IPR000504 GO:0003723
Acco05g0306 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 388 IPR000504 GO:0003723
Acco05g0306 883 CDD RRM3_MEI2_like 729 814 IPR034454 -
Acco05g0306 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 394 IPR000504 GO:0003723
Acco05g0306 883 Gene3D - 320 417 IPR012677 -
Acco05g0306 883 FunFam MEI2-like protein 5 isoform 2 225 319 - -
Acco05g0306 883 FunFam Protein MEI2-like 1 320 415 - -
Acco05g0306 883 CDD RRM2_MEI2_like 320 390 - -
Acco05g0306 883 Gene3D - 225 319 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0306 Acco-ChrAcco05 3898780 3906089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0306 233 387 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 9.52e-11 63.5