Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0230 ATGTTAAATCGAAGTGGTGGGAGGGACCGGTTTAGAAGGGATTACCCTTCAAGATTTGAAGATAAAGGCAACAATGGGCGTAGCAATAGCAGCAACCCACCTTCCAGGCACCTCTGGGTTGGGAATCTGGCACACAGTTTAACAGAGGATGAACTTACCCGTCATTTTCTACAATTTGGACCACTTGAAAGTGTAGCATTCCAACCTGCTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCTATTGATGCTTTGAAAGAACTTCAAGGTTATCCTATTAAAGGCAACCCGCTTAGAGTTGAATTTGCTAAGGCGGATAAGCCACCGTCACTAACTCATGATGAAGATTACTCTTGGAATGAACGAAGCTCAGGGAGAAGAGGATCTCCTTTCACTCAAAGAGAGTTCAGAGGACGCCATGGTAGTCCTGAGCCTCCTTATCTTGACAAATCCAAGCCGACTGATAAAAACCCAGAACCCAGTGAGGTTTTGTGGATAGGATTTCCATCTCAATTAAATGTGAATGATTTAGCTTTGAGAAGGGCTTTTTCTCCATTTGGTGGGATCGAGAAGATTACAACATTTCCAGGTCGTAGTTATGCTTTTGTTCGTTTTAGGAGTCTAGCATCAGCACGCAGAGCCAGAGATGCTCTTCAGGGAAAGTTATTTGGAAATCCTCGCGTACATATTTGTTTTGCAAAGAGTGAAACTGGTTCATCAGGTAGTGGGACTGGGAGGTTTTCAACTAACACCCCATCATCCCCACTTTACACATCAGGTGGTGGTCATGGATCGACCGAGAACTTGAGACAAGATAGGGGTATTGCAGGCTTCAGTGGAGACCGTAGGGCCAGTTCCCCTAATATTTTCCCAAAATGGGACTTGGCAGATTCTGATACTTATGATTCAGATGGAAGGGGTTCTTCACGGGCCAGGGGATTTGGTTCATATGAACAAAGGAGGGTTGGTGAAAGGGTGCCACCACTTGGATTGCTACAAGACAGTTTTGAACACTCAATAAGTCCTTCTAGAGATAGACAAGCTCATCTAGGTACTTTTCCTCAGAGATACCCTCAAAAGCATGCATTATTTGATGATCCACGGGACTTTCCAGACGATGTGTATTATCAACATGACACTAAAAAACTGAAGACTGGATCTCTTCCTCCTGAAAAGGAGCTTCCAGAGTATCCTCTTTCTGATTTAGAAGGGCAGAGGCGTCCACTCCCACGGTTATTAACCGATTTACCCCAACATGAGTTCATTGATAAAAGAATTGACGATGGACCTGTTGTGCACAGACAAACTTTTGATCCCAGACCAAATTCCCCTTTTGGTCGGTCAGATAGGAGCGAGCGCTGGAAGCCCAGTGATAGTTTCCATGTGGCTCCTAGTGCTCTGCAATCGTATCCTATTGAGAAGAGAAGACTCACACCTGAACCTAGTAGCTCATCTTTGACTGAGTGGAAATGGGAAGGAACCATTGCCAAAGGTGGAACACCTGTTTGTCGTGCTCGCTGCTTCCCTGTGGGAAAAGTCATGGATATTATGTTACCTGAATTCTTGGATTGCACAGCGAGGACTGGTCTAGACATGCTTTCAAAGCATTATTACCAAGCGGCTGGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGCGATGTTGACATTGAATACTACAACGAATTCATGCATTACCTGGAGGAAAAGCGTAGGGCTGCAGTTGCCAAGTTAGACGACAGGAATACCTTGTTTCTTGTACCTCCATCAGATTTCTCAGAGAAAGTATTGAAGGTACCTGGAAAGTTGAGCATATCTGGTGTGGTTCTAAGGTTGGAGCATCCTGGTTTAGCTCAAGGGTCCATGCACAATCAAAATGAAGCTAAAGATGGAAACTCGTTGTCATATCATGGTGATGCATTGTATCCAAATCCACCAATGTCATCAGCTCGTAGTCCCCCGCCTTTTACATCCGTTCCTGAAGGAATGAGCAATCTTTCTTTCCTTGGAAATAAGAACTCAGCAGCCGTGCCTATCACTGTTTCTGGTTCAGCTCATGCCATAGTTGGCACATCTGGTTCTTCTCATGATGGAAGGAGGGGACAGGATTATCATCCAGTTCAACTGCAGAACCATACATCGGGACCGAATTGGTCTGCTAACAATCTTCAGACCTTGATATCCAATAGAAATTTGTCATCACAACTATCAAATAGTTCTGCTGAACCTCTTACTCAGGATCATCTACTAAGCCAAATTGGTCTGCCTGGAGGATCCCTGCAACAAGAGCAGCTTGCACAACTAGCGGCATCTCATCTTGAGCAGCAGAGGCAATCAGGAAGCGCTCTGAGTGTATCCGCACCGGATGATCCGAGGCAAACTCATAGAGCTAACAGGTCCAACACCACCTCCAGTACATCCCAAAAATACCCCGTTCAAAATAACACAATGAATCCTGAACTTGCAACATCTCAGTATGAACAGCTTCTACAACTTCAAAAGCAACAGCAGATGTCAAATGTGCCGTCTCAAGGATCACAAACGGCTCAAAGAGAGCCGCAGAGAGTGGCCAACGGGAACCAGCAACCGTTAACTGGTGATGGTAACGTGCAGCAAGATGCAGAAGCAGATCCACAGAAGCGTCTACAAGCGACATTACAGTTGGCGGCAGTTCTTCTCCAACAAATTCAGCAAGGGAAAGGAAGTTAG 2715 0.4519 MLNRSGGRDRFRRDYPSRFEDKGNNGRSNSSNPPSRHLWVGNLAHSLTEDELTRHFLQFGPLESVAFQPARSYAFINFRRDEDAIDALKELQGYPIKGNPLRVEFAKADKPPSLTHDEDYSWNERSSGRRGSPFTQREFRGRHGSPEPPYLDKSKPTDKNPEPSEVLWIGFPSQLNVNDLALRRAFSPFGGIEKITTFPGRSYAFVRFRSLASARRARDALQGKLFGNPRVHICFAKSETGSSGSGTGRFSTNTPSSPLYTSGGGHGSTENLRQDRGIAGFSGDRRASSPNIFPKWDLADSDTYDSDGRGSSRARGFGSYEQRRVGERVPPLGLLQDSFEHSISPSRDRQAHLGTFPQRYPQKHALFDDPRDFPDDVYYQHDTKKLKTGSLPPEKELPEYPLSDLEGQRRPLPRLLTDLPQHEFIDKRIDDGPVVHRQTFDPRPNSPFGRSDRSERWKPSDSFHVAPSALQSYPIEKRRLTPEPSSSSLTEWKWEGTIAKGGTPVCRARCFPVGKVMDIMLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPESDVDIEYYNEFMHYLEEKRRAAVAKLDDRNTLFLVPPSDFSEKVLKVPGKLSISGVVLRLEHPGLAQGSMHNQNEAKDGNSLSYHGDALYPNPPMSSARSPPPFTSVPEGMSNLSFLGNKNSAAVPITVSGSAHAIVGTSGSSHDGRRGQDYHPVQLQNHTSGPNWSANNLQTLISNRNLSSQLSNSSAEPLTQDHLLSQIGLPGGSLQQEQLAQLAASHLEQQRQSGSALSVSAPDDPRQTHRANRSNTTSSTSQKYPVQNNTMNPELATSQYEQLLQLQKQQQMSNVPSQGSQTAQREPQRVANGNQQPLTGDGNVQQDAEADPQKRLQATLQLAAVLLQQIQQGKGS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0230 904 MobiDBLite consensus disorder prediction 109 125 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 771 818 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 355 374 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 621 660 - -
Acco05g0230 904 Gene3D - 11 147 IPR012677 -
Acco05g0230 904 SUPERFAMILY RNA-binding domain, RBD 24 112 IPR035979 GO:0003676
Acco05g0230 904 SUPERFAMILY RNA-binding domain, RBD 140 244 IPR035979 GO:0003676
Acco05g0230 904 SMART rrm1_1 166 234 IPR000504 GO:0003723
Acco05g0230 904 SMART rrm1_1 37 104 IPR000504 GO:0003723
Acco05g0230 904 MobiDBLite consensus disorder prediction 22 36 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 108 165 - -
Acco05g0230 904 CDD SPOC_FPA-like 493 612 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 835 871 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 799 818 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 240 274 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 708 722 - -
Acco05g0230 904 CDD RRM_SF 38 104 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 240 269 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 690 722 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 384 411 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 435 461 - -
Acco05g0230 904 Gene3D - 152 244 IPR012677 -
Acco05g0230 904 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
Acco05g0230 904 MobiDBLite consensus disorder prediction 135 160 - -
Acco05g0230 904 CDD RRM_SF 167 233 - -
Acco05g0230 904 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 835 883 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 1 21 - -
Acco05g0230 904 PANTHER RNA RECOGNITION MOTIF-CONTAINING 26 898 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 1 36 - -
Acco05g0230 904 MobiDBLite consensus disorder prediction 771 790 - -
Acco05g0230 904 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Acco05g0230 904 MobiDBLite consensus disorder prediction 292 331 - -
Acco05g0230 904 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 230 IPR000504 GO:0003723
Acco05g0230 904 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 102 IPR000504 GO:0003723
Acco05g0230 904 Pfam SPOC domain 487 602 IPR012921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0230 Acco-ChrAcco05 2893363 2902489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0230 37 107 Eukaryotic Initiation Factors Gene Family AT2G36660 32.895 6.57e-07 51.2