Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0207 ATGGGTTACATATGTGATTTTTGCGGAGATCAGAGGTCCATGGTGTACTGCCGTTCTGATGCTGCATGTTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCTAATGCTCTTTCCAAGCGTCATCAAAGAACCCTTTTGTGTGAGAGATGTAATTCAGAACCTGCTCTTGTACGGTGTTCTGAAGAGAAGATTACACTATGTCAGAACTGTGATTGGTTAGGTCATGCACCTACTACATCTTCTCCAACACATAAGAGGCAAGCGCTCAATTGCTACTCTGGCTGTCCTTCAGCAGAAGAATTTTCTTCGATATGGTCATTTGTCTTGGATATCCCTCCCATGGGTGAAACTACCTGCGAGCAGAAACTAGGTTTGATGACCATTAATGAGAACAGCAACAAAAGTGCTTGTGTTCCTCCCGAAAGCCAGAATGCATCTGGTTCAGCTGGAGTAACTGATTCAGACAGCTTCAATAAGTCTTGTGCTGGGGCCTTTGCAATACCTGAGTCAAGCTCAGAACCTCATATTCTAGACCCATCAACTGGACCTACCAGAGAATGTTTGCCCAAGTTATACTGTCCCAGTACAAAAGGTCCTGCACGATATGAAAATGATGAAGATGATAGCCTGTATGGTGATTTTGACATGGATGAAATGGATCTGAATCTTGAGAACTATGAGGAACTTTTTGGGATGACTCTTACTCATTCTGAAGAACTCTTTGAAAATGGTGGAATTAATAGCTTGTTTGGGACAAAGAATGTGTCTACTGGTGGTGATTCTAATTGTCAGGGATCTGTTGCTGCTGAGGGTTCACCGGCTCGACTGGTCAATGCGGTGCAACCAGCATACAGCAATACAGCCTCTGCAGATTCAAATGTGAGCACTAAAACTGAACCGATTCTTTGTTTTGCGGGGAAGCAAGCGCAATCAAATCTTTCTTTTTCCGGGGTCACTGGAGATAGTAGTGCTGGAGATTATCAAGACTGTGATGATGCTTCAATGCTTCTCATGGGAGAGCCTCCTTGGTGTCCTCCTTGTCCTGAGAATTCAATACAATCTGCCAACCGCAGCAACGCTGTCATGCGTTATAAGGAAAAGAAAAAGATACGCATGTTTGACAAAAAAGTGAGGTATGCCTCTCGCAAGGCAAGAGCCGATGTCCGAAAGCGCGTGAAGGGCCGGTTTGTCAAAGCTGGGGAAGCTTATGATTATGACCCTTTGAGCCCAACCAGAAGCTATTGA 1248 0.4423 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHQRTLLCERCNSEPALVRCSEEKITLCQNCDWLGHAPTTSSPTHKRQALNCYSGCPSAEEFSSIWSFVLDIPPMGETTCEQKLGLMTINENSNKSACVPPESQNASGSAGVTDSDSFNKSCAGAFAIPESSSEPHILDPSTGPTRECLPKLYCPSTKGPARYENDEDDSLYGDFDMDEMDLNLENYEELFGMTLTHSEELFENGGINSLFGTKNVSTGGDSNCQGSVAAEGSPARLVNAVQPAYSNTASADSNVSTKTEPILCFAGKQAQSNLSFSGVTGDSSAGDYQDCDDASMLLMGEPPWCPPCPENSIQSANRSNAVMRYKEKKKIRMFDKKVRYASRKARADVRKRVKGRFVKAGEAYDYDPLSPTRSY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0207 415 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Acco05g0207 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
Acco05g0207 415 CDD Bbox1_BBX-like 47 90 - -
Acco05g0207 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 403 - -
Acco05g0207 415 SMART bboxneu5 4 47 IPR000315 GO:0008270
Acco05g0207 415 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Acco05g0207 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Acco05g0207 415 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0207 Acco-ChrAcco05 2645264 2649297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0207 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 53.935 1.04e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Acco05g0207 CCT 8.8e-17 CL0281