Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0172 ATGGCGGATTCGGATAACGAATCGGGTGGGGTGTACGGCGGCAACGCGAACAGCGATTTTTCGACGAAGGAGCAGGATAGGTTTTTGCCGATAGCGAACGTGAGTAGGATAATGAAAAAGGCGTTACCGGCGAACGCGAAAATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGTGTGTCGGAGTTTATAAGCTTTGTGACAGGGGAGGCTTCGGACAAGTGCCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTTTAGGGTTCGAGGATTATGTGGAGCCCTTGAAGATTTACCTACAGAAGTATCGGGAGATGGAAGGGGATAAGACTTCCCTTGGGAGGCACGGCGAGAAGGAAGGTGGCAGCTCCGGTGGAAGTGGGGTTGTTGGGTTTAACGGCCCAGAGGGCATGTACGGTGGGATGACGATAGGGCATCATCAGGGGCATGTGTACGGTTCTGGTGGGTTTAACCCAGGCAACGGTGGTGGTGGTGGGGGCTCCAATATGAGATCCAGGTAG 546 0.5458 MADSDNESGGVYGGNANSDFSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYREMEGDKTSLGRHGEKEGGSSGGSGVVGFNGPEGMYGGMTIGHHQGHVYGSGGFNPGNGGGGGGSNMRSR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0172 181 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Acco05g0172 181 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Acco05g0172 181 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Acco05g0172 181 MobiDBLite consensus disorder prediction 1 21 - -
Acco05g0172 181 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Acco05g0172 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Acco05g0172 181 Gene3D Histone, subunit A 17 136 IPR009072 GO:0046982
Acco05g0172 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
Acco05g0172 181 SUPERFAMILY Histone-fold 25 131 IPR009072 GO:0046982
Acco05g0172 181 MobiDBLite consensus disorder prediction 161 181 - -
Acco05g0172 181 MobiDBLite consensus disorder prediction 118 140 - -
Acco05g0172 181 FunFam Nuclear transcription factor Y subunit B-3 17 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0172 Acco-ChrAcco05 2257599 2258144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0172 1 160 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.364 9.18e-77 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Acco05g0172 CBFD_NFYB_HMF 1.6e-27 CL0012