Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0141 ATGAAATCGCTTATTGAAGATATTTATGGTTTTTGTGATGAGTGCGTAATTCTGGATAAAATGCAATCGGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGACTTAGGGAGTATTTCAGTTCTTATGGGGAGATTGTGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCTCGTGGATTTGGTTTTGTAGTTTTTGCTGACCCAGCTGTTGCAGATAGAGTTATCAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTGTCCCTAGAGATGACCAGAACATACTGAACAGAAGCAGTAGTAGCATCCAGGGTTCTCCTGGTCCAGGCCGCACTAGAAAGATATTTGTAGGAGGTCTAGCACCAACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACCATAACAGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAAGCTGTTGAGAAGGTCTTACTTAAGACATTCCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAATTATCACCAGGACCAAACCGCAGCCCACTTACTGGATATAACTATGGAATGAATAGGGTCAATAGTTTCCTAAATGGCTTCACTCAGGGGTATACTCCAAGTGCTGTTGGAGGCTATGGACTGAGGATGGATAGTAGATTCAGTCCAGTAGCAAGTGGTCGAAGTGGATTTGCTCCGTTTGGATCTGGTTATGGAACAAGTATGAATTTTGAGCCTGGCTTGAACCCTGGATTTGGTGGGAATGCTAACTTCAATAGCAATCTCAGCTATGCTCGGGGATTGAATCCTTATTATGTTGGCAGTTCTAATAGGTTTGGGAGTCCAATTGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCCGCGACTCGAAATTTGTGGGGGACTGGTGGTCTTAATTATGGAACAGGCTCTGCAAATTCCAATAACGCGTACATGGGATTGGGAAGTGGGAATGCGGGAGGAAACTCATTTGGGACTGGAGTGAACTGGGGTTCTTCAGGAGTTTCTGGTCAAGGTGGTTTAAACAATGCGCCACAGAGTAGTGGCAACCTTCGCTATGGAGGCGGGGACAGTAGTTATGGTTTGGGGGCAGGAGGGTTTGGAGGTAACGGTGGCAGAAGTATTGCCCCTACATCATCATACTCCTCATCAAATGGTGTGTTTGATGGGGCCTTTACTGATTTTTACAATAGTAGTTCAGCTTATGGGGATCCCACTTGGCAATCTTCAAACTCTGAGCGAGATGGGTCCGGTCCCTTTGGTTATGGTCTTGGCAGCGCAGCTTCAGATGTTTCTGCCAAAAGCTCTCCTGGTTACATTGGTGGTTATACTGTTAACAAGAGACAGCCAAATAGAGGTAAAAGCTATTGTAATTATATTTTCTTGTTTCTCCTTTCTCTTCCTTCTCCAGAAACACTTGTGTGGATAGGAGCAAAATAA 1566 0.4381 MKSLIEDIYGFCDECVILDKMQSDNGKLFIGGISWDTNEERLREYFSSYGEIVEAVIMKDRTTGRARGFGFVVFADPAVADRVIKEKHNIDGRMVEAKKAVPRDDQNILNRSSSSIQGSPGPGRTRKIFVGGLAPTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPLTGYNYGMNRVNSFLNGFTQGYTPSAVGGYGLRMDSRFSPVASGRSGFAPFGSGYGTSMNFEPGLNPGFGGNANFNSNLSYARGLNPYYVGSSNRFGSPIGYDGGNGGNNSFFSSATRNLWGTGGLNYGTGSANSNNAYMGLGSGNAGGNSFGTGVNWGSSGVSGQGGLNNAPQSSGNLRYGGGDSSYGLGAGGFGGNGGRSIAPTSSYSSSNGVFDGAFTDFYNSSSAYGDPTWQSSNSERDGSGPFGYGLGSAASDVSAKSSPGYIGGYTVNKRQPNRGKSYCNYIFLFLLSLPSPETLVWIGAK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0141 521 CDD RRM1_hnRNPA_hnRNPD_like 28 98 - -
Acco05g0141 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 185 IPR000504 GO:0003723
Acco05g0141 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 89 IPR000504 GO:0003723
Acco05g0141 521 SUPERFAMILY RNA-binding domain, RBD 19 125 IPR035979 GO:0003676
Acco05g0141 521 Gene3D - 24 108 IPR012677 -
Acco05g0141 521 SUPERFAMILY RNA-binding domain, RBD 125 213 IPR035979 GO:0003676
Acco05g0141 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 203 IPR000504 GO:0003723
Acco05g0141 521 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 21 494 - -
Acco05g0141 521 Gene3D - 123 209 IPR012677 -
Acco05g0141 521 FunFam Heterogeneous nuclear ribonucleoprotein 1 25 107 - -
Acco05g0141 521 CDD RRM2_Hrp1p 127 204 - -
Acco05g0141 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 102 IPR000504 GO:0003723
Acco05g0141 521 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 210 - -
Acco05g0141 521 SMART rrm1_1 127 199 IPR000504 GO:0003723
Acco05g0141 521 SMART rrm1_1 27 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0141 Acco-ChrAcco05 1892857 1895052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0141 28 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.571 1.63e-09 58.5