Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0140 ATGTATTTGATGACGTGGTTGGAACTAGATATGCTTGAACAATCTGATAGCTGCACCGCCATTAGTTTCCGGTTTACTCCATCGTGGGATGCTCCTTTGTTTATTGGTTTTGATGGTTGTGATAAAATGCAATCCGACAATGGTAAGTTATTTATTGGTGGGATATCATGGGATACAAATGAAGAGCGACTTAGAGAGTATTTCAGTTCTTATGGGGAGGTTGTGGAAGCAGTGATTATGAAGGATCGGACAACTGGTAGAGCCCGTGGATTTGGTTTTGTAGTTTTCGCAGACCCAACTGTTGCAGAGAGAGTCATAAAAGAGAAGCACAGCATTGATGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACAAAAAAGATATTTGTTGGTGGTTTAGCATCTAGTGTTACGGAGAGTGATTTCAAGAGGTGCTTTGATCAATTTGGGACAATAACGGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAGGGTCTTACTTAAGACCTTCCATGAACTGAATGGCAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGAACTATCACCCTTGCCAAACCGAAGCCCACTTACTGGATATAACTATGGAGTGAATAGGGTCAATAGTTTCCTAACTGGCTTCACCCAGGGCTATACTCCAGGTGCTGTTGGAGGCTTTGGACTTAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGCAGAAGTGGGTTTTCACCATTTGGATCTGGTTACGGGATGAATATGAATTTTGAGCCTGGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAACAATCTTAATTATGGTCGGGCAATAAATCCATATTATATTGGAAGCTCAAGAAGGTTTGGGAGTCCTGTTGGGTACGATGGTAATAATGGAGGAAACAATTCTTTCTTCAGCTCTGCAACTCGGAACTTGTGGGGAACTGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAATGCATACACAGGATCAGGAAGTGGGAATGTTGGGGGAAATATTTATGGCAATGCTAGAGCCAGTTGGGGTTCTTCGGCAACTTCTGCTCAAGGTACTATGAACAATGTGTCACAAAGTAGCGGTGGTAACCTTGGCTTTGGGGGAGACGACAATAGTTATGGTTTGGGAACTGGAGGGTATGGAAGAAATAGTGGTACAAATATTGCTCCAACATCATCACACTCTGCATCAAATGGTGGTTTTGATGGAGCTTTTGCTGATATATACAATAATAGTTCAGTTTACGGGGACCCCACCTGGCGGTCTTCAAATTCTGAGCTAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGCTGCAGCTTCAGATGTTGCTGCTAAAAGCCCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1566 0.4361 MYLMTWLELDMLEQSDSCTAISFRFTPSWDAPLFIGFDGCDKMQSDNGKLFIGGISWDTNEERLREYFSSYGEVVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHSIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASSVTESDFKRCFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVERVLLKTFHELNGKMVEVKRAVPKELSPLPNRSPLTGYNYGVNRVNSFLTGFTQGYTPGAVGGFGLRVDGRFSPVASGRSGFSPFGSGYGMNMNFEPGLSPGFGGNANFNNNLNYGRAINPYYIGSSRRFGSPVGYDGNNGGNNSFFSSATRNLWGTGSLNYGTSSANSNAYTGSGSGNVGGNIYGNARASWGSSATSAQGTMNNVSQSSGGNLGFGGDDNSYGLGTGGYGRNSGTNIAPTSSHSASNGGFDGAFADIYNNSSVYGDPTWRSSNSELDGSGPFGYGLGAAASDVAAKSPPGYVGGYTVNKRQPNRGIAT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0140 521 SMART rrm1_1 49 120 IPR000504 GO:0003723
Acco05g0140 521 SMART rrm1_1 149 221 IPR000504 GO:0003723
Acco05g0140 521 Gene3D - 46 130 IPR012677 -
Acco05g0140 521 CDD RRM2_Hrp1p 149 226 - -
Acco05g0140 521 MobiDBLite consensus disorder prediction 123 147 - -
Acco05g0140 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 225 IPR000504 GO:0003723
Acco05g0140 521 Gene3D - 145 230 IPR012677 -
Acco05g0140 521 MobiDBLite consensus disorder prediction 501 521 - -
Acco05g0140 521 SUPERFAMILY RNA-binding domain, RBD 42 146 IPR035979 GO:0003676
Acco05g0140 521 FunFam Heterogeneous nuclear ribonucleoprotein 1 145 232 - -
Acco05g0140 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 207 IPR000504 GO:0003723
Acco05g0140 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 111 IPR000504 GO:0003723
Acco05g0140 521 MobiDBLite consensus disorder prediction 128 142 - -
Acco05g0140 521 CDD RRM1_hnRNPA_hnRNPD_like 50 120 - -
Acco05g0140 521 FunFam Heterogeneous nuclear ribonucleoprotein 1 47 129 - -
Acco05g0140 521 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 43 517 - -
Acco05g0140 521 SUPERFAMILY RNA-binding domain, RBD 147 243 IPR035979 GO:0003676
Acco05g0140 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0140 Acco-ChrAcco05 1875800 1880865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0140 30 323 Eukaryotic Initiation Factors Gene Family AT1G71770 25.373 2.10e-15 77.4