LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g0124	ATGATTTCATCTCAGAAGGAGCAAAATAGATTAACCACACCAATGGCTAAATCTCTCTGGGTTTCTCTGATTCTGTTCATGTTCTTGAATTCTCAGCTTCCTTCTTCACAAGCTCAACAAGAGTACGTCAACAACAAGCAACTAGACTGCGACAGCGGCAAAATCTACAATGCCACCTTCGGTAATCTCTGCAATGGCGTCTCTCGTTCCTGCAATTCTTACCTCACTTTCCGATCAATCGCTCCCCTCTACAACACTCCTTCCTCCATAGCCTTTCTCTTAAACTCCGACGCCTCTGCCATAGCCAAAGCCAACAAAATCTCCGACGTTAACCCCATCGCCGACGATACCATCGTCATCGTCCCCATTAACTGCTCCTGCTCCGGCAACTACTACCAACACAACGCCTCCTACGTCTTGAAGCAACAAGGAGAAACTTATTTCAGTGTTGCTAATAATACCTATCAGGCTCTCACTACTTGTCAAGCTATTGAACATCAGAATGTTTACAATAAGCGGAATCTTAGTGCTGGGATGAGTTTGCGTGTGCCTCTTCGGTGTGCTTGTCCCACGACGAAGCAGGAAGATTCTGGGTTTAAGTATTTGCTTACCTATTTGATTGCTAAAGGAGAAACGGTTGATTCTATTGGCGGTCAATTTGGGGTTGATGGACAGAATGTTTCCGATGCCAACGAGCTTTCTGCGGATGACTTTATTTTCTATTTCACTCCAATCTTGGTTCCTCTGAGAAAAGAGCCCGACCCGATTAAAGTCGCCTCCCCTCCTCCTTCTCCTCCTCCTCCGCCGCCGCCAGCTGCGAGCTCTACCGACTCTAGCTCTTCCAAGAAAGGGGTCATCGTCGGAGTTACGGTCGGAGCTGTTCTTGTTCTTCTTATTGGCTTGTCGGGATTTCTCTTCTGGTCCCGCCGCCGCCGCCAGAGGAAATCTCAGCTGCCTTCTTCGGCTCCGACATCTATCGACAACAACAAGAAGACCGTGGGCTCCGGCGGCACGACCCAGTCATGGTCTATTTCATCGGATGGGATTCGCTACGCCATTGATTCGTTGACGGTTTACAGGTTCGAGGATTTGCAGAAGGCGACGAGTTTCTTCAGCGAAGCTAACAAGATCAAAGGATCCGTATACAGAGCAACGTTTAGAGGAGACGATGCCGCCGTTAAAATCTACAAAGGCGACGTCTCGAAAGAAATCGGCATTCTTAAGCGACTCAACCACACCAACATCACGAGGCTCTCTGGTTTCTGTGTCCACAAAGGAGACACCTATCTCGTTTATGAGTTCGCTGATAATGGCTCACTCGACGATTGGCTTCATTCGAAAGACAAAATCAAAAACAATTTTCAGGATTCATCTTCGACGATTCTGAATTGGAGACAGAGGGTTCAGATTGCTCACGACATATCTGATGCATTGAATTACCTTCACAATTACACCAACCCTCCTCATATCCACAAGAATCTCCAGAGTGGGAATGTGCTTCTGGATGGGAATCTCAGAGCCAAGGTTTCGAACTTTGCATTAGCAAGAGTAATGGAGGATGATGATGAAGAAGGTGGGTTTCAAGTGACGAGGCATGTGATAGGCACACAAGGGTATATGGCACCAGAGTATATTGAGAACGGAATGATAACTCCAAAAATGGATGTTTTTGCACTTGGGGTTGTGATTCTGGAGCTGATATCAGGGAAGGAAGCCATTGTTGGGGAGGATAAGCTTCTGTCATCGTGTGTAAAGGAGGTGCTTGAAGGAGACAATGTGAGGGAGAAGCTTAGAGGATTTGTGGATCCAAGTTTGGGGGATGAACACCCTTTGGATTTGGTATACTCTCTTGCACAAGTTGCTAAACGCTGCGTTGAAAGAGACATGAATACAAGACCAGTCATTTCAGAGGTGCTCATGACTCTGTCTAAGATTCAATCATCTACACTTGATTGGGATCCTTCTGATGAGCTTGATAGGTCCAGATCTGTCAGCAAAGTTTCTGATGCCAGGTAA	2016	0.4663	MISSQKEQNRLTTPMAKSLWVSLILFMFLNSQLPSSQAQQEYVNNKQLDCDSGKIYNATFGNLCNGVSRSCNSYLTFRSIAPLYNTPSSIAFLLNSDASAIAKANKISDVNPIADDTIVIVPINCSCSGNYYQHNASYVLKQQGETYFSVANNTYQALTTCQAIEHQNVYNKRNLSAGMSLRVPLRCACPTTKQEDSGFKYLLTYLIAKGETVDSIGGQFGVDGQNVSDANELSADDFIFYFTPILVPLRKEPDPIKVASPPPSPPPPPPPAASSTDSSSSKKGVIVGVTVGAVLVLLIGLSGFLFWSRRRRQRKSQLPSSAPTSIDNNKKTVGSGGTTQSWSISSDGIRYAIDSLTVYRFEDLQKATSFFSEANKIKGSVYRATFRGDDAAVKIYKGDVSKEIGILKRLNHTNITRLSGFCVHKGDTYLVYEFADNGSLDDWLHSKDKIKNNFQDSSSTILNWRQRVQIAHDISDALNYLHNYTNPPHIHKNLQSGNVLLDGNLRAKVSNFALARVMEDDDEEGGFQVTRHVIGTQGYMAPEYIENGMITPKMDVFALGVVILELISGKEAIVGEDKLLSSCVKEVLEGDNVREKLRGFVDPSLGDEHPLDLVYSLAQVAKRCVERDMNTRPVISEVLMTLSKIQSSTLDWDPSDELDRSRSVSKVSDAR	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g0124	671	Gene3D	Phosphorylase Kinase; domain 1	336	434	-	-
	Acco05g0124	671	Gene3D	Transferase(Phosphotransferase) domain 1	436	663	-	-
	Acco05g0124	671	FunFam	PTI1-like tyrosine-protein kinase 3	435	656	-	-
	Acco05g0124	671	MobiDBLite	consensus disorder prediction	316	340	-	-
	Acco05g0124	671	ProSiteProfiles	Protein kinase domain profile.	327	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g0124	671	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	21	655	-	-
	Acco05g0124	671	MobiDBLite	consensus disorder prediction	650	671	-	-
	Acco05g0124	671	SUPERFAMILY	Protein kinase-like (PK-like)	345	640	IPR011009	-
	Acco05g0124	671	MobiDBLite	consensus disorder prediction	653	671	-	-
	Acco05g0124	671	MobiDBLite	consensus disorder prediction	253	280	-	-
	Acco05g0124	671	Pfam	Protein kinase domain	397	639	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g0124	671	ProSiteProfiles	LysM domain profile.	203	247	IPR018392	-
	Acco05g0124	671	MobiDBLite	consensus disorder prediction	317	340	-	-
	Acco05g0124	671	MobiDBLite	consensus disorder prediction	255	274	-	-
	Acco05g0124	671	Pfam	LysM domain	205	248	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g0124	Acco-ChrAcco05	1543154	1545169	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g0124	21	664	Receptor kinase-like Gene Family	AT2G33580	50.296	0.0	605

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Acco05g0124		Pkinase	4.3e-34	CL0016