Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0021 ATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACCTGAATCTACCAAGATCTCTGATTCACAACCTGAACAACCCCAAGAAGAGCAAATCCACGAGGAAGTTAGAGTGGACGAACAACCGAACCCCGAAGCAACCCCTGAAGAGCACCAGGGACACGAAAGGATGGCCGTAGACGATGATACGCATCAGGAAGATGTAAAATTAGAAGAAAACGCGGATGTAAGTGTACCTCCTGAAGTTCAACCTCAAGAGCAGGATAGAGAGCACCCCGAAACGGCGGAAGTTACAGCCGATGCTGCTCCATCTGAATCAGCTCAGGTTGAAGCGAATGGAGCCGAGGAAGGCAACGATAACGATGGTGATGTTGAGGCTTTGGACGAAGAGGAGCCTATAGAGAAGCTTCTTGAACCTTTTACGAAGGAGCAGCTCTACACTCTTGTCAGGCAAGCTGCAGAGAAGTACCCGGATTTTATCGACAACGTCCGTCAGCTGGCGGACGTGGACCCTGCCCACCGAAAAATCTTCATCCACGGTCTTGGTTGGGACACAACTGCCGAAACCCTTACGAGTGTGTTTGGGAAGTATGGCGAGATTGAGGATTGTAAGGCTGTCACTGACAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCTTGTTCAAGCATCGAAGTGGGGCTCGGAAGGCGCTGAAACAGCCACAGAAGAAGATTGGGAACCGAACCACATCATGTCAATTGGCATCCGCGGGACCGGTTCCTTCGCCTACTGCAGTGGTCCCACCGATGTCTGAATATACTCAAAGGAAGATCTTTGTCAGCAATGTAAGTGCAGAAATCGATCCCCAAAAATTGCTTGAGTTCTTCAGTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAGACGGGCAAGCCCAAGGGATTTGCACTGTTTGTATACAAGTCAGTAGAGAGTGCAAAGAAGGCTTTGGAAGAGCCGCACAAAAACTTTGAAGGACATACATTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCATCACCAGCAGCAGCATCATCCTCATCATCATCAGCCTCAGTACCAGTCAAGAAAGGAGAAGAATAAGTTTCAACCCTGGAGTGGCTGCACAGGGGCTGAATCCGGCACTTGGGCAGGCCTTGACTGCTTTGCTTACTACCCAAGGTGCTGGGCTAGGGCTGGGTAA 1230 0.4935 MAKKRKLRSSEPESTKISDSQPEQPQEEQIHEEVRVDEQPNPEATPEEHQGHERMAVDDDTHQEDVKLEENADVSVPPEVQPQEQDREHPETAEVTADAAPSESAQVEANGAEEGNDNDGDVEALDEEEPIEKLLEPFTKEQLYTLVRQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVTDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPTAVVPPMSEYTQRKIFVSNVSAEIDPQKLLEFFSQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQHHPHHHQPQYQSRKEKNKFQPWSGCTGAESGTWAGLDCFAYYPRCWARAG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0021 409 SMART rrm1_1 173 245 IPR000504 GO:0003723
Acco05g0021 409 SMART rrm1_1 269 341 IPR000504 GO:0003723
Acco05g0021 409 Gene3D - 259 379 IPR012677 -
Acco05g0021 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Acco05g0021 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 338 IPR000504 GO:0003723
Acco05g0021 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Acco05g0021 409 SUPERFAMILY RNA-binding domain, RBD 253 368 IPR035979 GO:0003676
Acco05g0021 409 MobiDBLite consensus disorder prediction 25 72 - -
Acco05g0021 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 249 IPR000504 GO:0003723
Acco05g0021 409 MobiDBLite consensus disorder prediction 1 122 - -
Acco05g0021 409 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 76 348 - -
Acco05g0021 409 Gene3D - 164 250 IPR012677 -
Acco05g0021 409 MobiDBLite consensus disorder prediction 349 375 - -
Acco05g0021 409 SUPERFAMILY RNA-binding domain, RBD 161 250 IPR035979 GO:0003676
Acco05g0021 409 MobiDBLite consensus disorder prediction 354 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0021 Acco-ChrAcco05 358557 359851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0021 264 347 C2H2 Transcription Factor Family AT2G19380 30.952 5.88e-09 56.2