Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2877 ATGGAAAACCTGGAGATCTCATCATCAGAATGTCCACTTCCCCCTCAAAACTCAAACAAAGGCCCATCATCAGGTAATAAGCGCCATGAGAGAAAGTACCTAGGGGTGAGACGAAGGCCGTCAGGGAAGTGGGTGGCTGAGATCAAGGACTCATCACAGAAGCTGAGGCTGTGGCTGGGAACTTTTGACAGAGCAGAAGATGCTGCCATGGCTTATGACTGTGCTGCTACGCTTCTCAGAGGAAGAAATGCCAAGACTAACTTCCACTGTCCTTCAGGCTCAGGAATGATCGCCAATACACGCCAGGAAATTTGCAGCTTTTTGCGTAAGAATCCAAGGGCTTACCACATTCTTAAGCATGCAATCATGAAAAACCATCATGCACTTGCTTCCTCCACAGCCTTGCCTTGGAACAACCAGACCAGTAACATTACGAGAGACGGGTTCGAGACGCTTGTTGAAGAAACCATAGTTTGCTGTTCCACTGCTAGTTCTGAACAAGCTTCTTCCTCCTCTTCTGGGTGCTGTGGGGTCTCATTTGGGAGTAATTCTAAGGTTTATTCTTCTGTAGTGGTGGCTCCATCTTTCAGCGTCTCGTTTTGTGGGGAAGAAACCCAGTAA 621 0.4783 MENLEISSSECPLPPQNSNKGPSSGNKRHERKYLGVRRRPSGKWVAEIKDSSQKLRLWLGTFDRAEDAAMAYDCAATLLRGRNAKTNFHCPSGSGMIANTRQEICSFLRKNPRAYHILKHAIMKNHHALASSTALPWNNQTSNITRDGFETLVEETIVCCSTASSEQASSSSSGCCGVSFGSNSKVYSSVVVAPSFSVSFCGEETQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2877 206 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Acco04g2877 206 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Acco04g2877 206 MobiDBLite consensus disorder prediction 1 36 - -
Acco04g2877 206 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Acco04g2877 206 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Acco04g2877 206 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
Acco04g2877 206 MobiDBLite consensus disorder prediction 1 23 - -
Acco04g2877 206 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Acco04g2877 206 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 155 - -
Acco04g2877 206 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Acco04g2877 206 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Acco04g2877 206 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2877 Acco-ChrAcco04 45333978 45334598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2877 15 101 AP2-EREBP Transcription Factor Family AT5G19790 57.303 4.15e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco04g2877 AP2 9.5e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2877 04 45333978 45334598 Acco04g2877 04 45333978 45334598 ECH