Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2861 ATGCCTTGGACAATGGCAGATGTCACCTACCTTCGCCACCGCGAACCCGACGACGATCCTCACCTTCCTGACCACACCCTGACTCTTGATTCTCTTCCCTACTGGTCCCACGCCGATTTTGATTTCGACTTCTATCCTTCCGATCCTGAATTCCCCCCACCCGATTCCCCCATCCGCGCTCTCAACGCCTCCCGTGATGCTGGCTCGTCTCACCAATTTGAATCCGCCATCTCTGTACGAGGTGACGATAACTTCTCGGACCCAGGTTCGATTCCCTCCACCGATCTACTGGACCGCGGAAACCAGGTAAATTTCGTTATGGATCTGTTTCAGCAGCGCGTTGAGCAATCGCAGGTCATGGGTCACAGCGATTTGGTCTCCGATGTCTTGGATGATTCTAATTTCGGTATTATTGACGGTCATTGCGACGTGGGTGTTGATGCTTTGGGTATGGATTACGGATTGGGCTTAGGGTTTGGCGTGGATAGGGATTCTTTGCCGGGTGATGACAATAGTGGGTTTATCGTTGAAAATTATGGTTCTGGCGGTGGTGGTGGAGATGGTGACCATTTTTTTGTTGGAAGGAGGGTTCCTGGATCTGAGTCCGTGGCGACACCATCTACGGCAGGCCGAATTCGGCCTTTTGACAACTGTATACGGCTCATGGAGTTCGGGTCAGATTCTGATGAGGAGAATGGGGCTTTGGGTGTGTGTGCGCATTCGGAAGATGAATACAATGTGCATGATGAGAACGACGATGTTGCCAGCATCCCTCTTTACTGGGATTCATTACAATTGGATGATAACAGGGAGAATGCTGAAGATTTTGAGTGGGAAGAAGTAGATGGCCGGGTTGATGAGAGGGAAGTTTTGAGCATGCTCACCGGTGAGGATGATGCGGCCGTATCAGTTCCAGTTTCCCCAGTAAATGGGCTTGAAGAAGAAGCAAGCATTATGAGAGCGGGAGGTGTGGAAAATTTGGGTTGGGAAGTGTTGTTGAATGCCAATAATTTGGACACGAACCCTGATTTGGATCACGATGCAGAACCTTATTTTGGTGATCATGATGACTATATTTATACTGCAGATTACGAAATGATGTTTGGCCAATTCGCTGACAATGATAATCTCTTGGTTGGTCGGCCTCCGGCTTCTGTATCAGTTGTTCAGAATCTGCCATCAGTGGTTGTGACCAAACAAGATATCGAAAATAATGGTGCACTTTGTGCAGTTTGTAAGGATGAGTTCAATGTTGAAGAACAGGCAAAGCAGTTGCCATGTTCTCATTTCTACCATGGCGAATGCATTGCCCCGTGGTTGGGAATTAGGAACACTTGTCCTGTTTGTCGATATGAGCTGCCTACTGATGATGCTGATTATGAGGGTAGGAGGGTGCAAAGATCTGGCCGTAGCTAA 1416 0.4845 MPWTMADVTYLRHREPDDDPHLPDHTLTLDSLPYWSHADFDFDFYPSDPEFPPPDSPIRALNASRDAGSSHQFESAISVRGDDNFSDPGSIPSTDLLDRGNQVNFVMDLFQQRVEQSQVMGHSDLVSDVLDDSNFGIIDGHCDVGVDALGMDYGLGLGFGVDRDSLPGDDNSGFIVENYGSGGGGGDGDHFFVGRRVPGSESVATPSTAGRIRPFDNCIRLMEFGSDSDEENGALGVCAHSEDEYNVHDENDDVASIPLYWDSLQLDDNRENAEDFEWEEVDGRVDEREVLSMLTGEDDAAVSVPVSPVNGLEEEASIMRAGGVENLGWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIYTADYEMMFGQFADNDNLLVGRPPASVSVVQNLPSVVVTKQDIENNGALCAVCKDEFNVEEQAKQLPCSHFYHGECIAPWLGIRNTCPVCRYELPTDDADYEGRRVQRSGRS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2861 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 310 454 - -
Acco04g2861 471 ProSiteProfiles Zinc finger RING-type profile. 409 450 IPR001841 -
Acco04g2861 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 456 IPR013083 -
Acco04g2861 471 SMART ring_2 409 449 IPR001841 -
Acco04g2861 471 FunFam E3 ubiquitin-protein ligase RING1-like 370 456 - -
Acco04g2861 471 SUPERFAMILY RING/U-box 390 456 - -
Acco04g2861 471 Pfam Ring finger domain 409 450 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2861 Acco-ChrAcco04 45199244 45200659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2861 255 456 C3H Transcription Factor Family AT5G60820 48.131 1.79e-53 183