Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2845 ATGGGGCGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTCACCTTCAGCAAGCGACGCTCCGGCCTCGTCAAGAAGGCCAAAGAGATCTCTGTCCTTTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCACCAAAGGCAAACTCTTCCACTTCTCCAGCGACCCCTGTATGGAAAGAATCTTGGAACAGTACGAGAGGTATTCCTACGCAGAGAGGCAACTTGCTTCAAAGGATCTGGAACCCAATTGTCACGAAAACTGGACTTTGCAGCACGCAAAGTTGAAGGCAAGGATAGAGGTTCTACAAAGAAATCAAAGGCATTTTATGGGGGAAGATTTAGAGGGATTAAGTCTGAAAGAGCTTCAGAATTTGGAGCATCAGCTGGAGTCAGCTCTCAAACACATAAGATCTAGAATGAATCGGCTCATGAACGAATCTATTTCAGAGCTTCAGAAAAGGGATAAGACACTGCAGGAACAAAACAACGTACTGGCTAAGAAGATAAAGGAGAGAGAGAAGGCAGTGGGGCAGTTGCAGAATAATCAAGGGTTCGATGATTCCTCTGTTCTGTTAGCACAACAACCATTGCTGCCTTTGAACATCATCGGAGGTTCAAGAGGGGAGGGTGTGGATTATGGAGGGAATCTGAATGATGAGGCTCGACCCAATAACACTATGCTCCCAGCTTGGATGCTTCGCCCTCTCCATGAATAG 732 0.4768 MGRGRVELKRIENKINRQVTFSKRRSGLVKKAKEISVLCDAEVALIIFSTKGKLFHFSSDPCMERILEQYERYSYAERQLASKDLEPNCHENWTLQHAKLKARIEVLQRNQRHFMGEDLEGLSLKELQNLEHQLESALKHIRSRMNRLMNESISELQKRDKTLQEQNNVLAKKIKEREKAVGQLQNNQGFDDSSVLLAQQPLLPLNIIGGSRGEGVDYGGNLNDEARPNNTMLPAWMLRPLHE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2845 243 Coils Coil 153 173 - -
Acco04g2845 243 Coils Coil 124 151 - -
Acco04g2845 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Acco04g2845 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco04g2845 243 Pfam K-box region 88 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco04g2845 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco04g2845 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco04g2845 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco04g2845 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco04g2845 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco04g2845 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Acco04g2845 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco04g2845 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Acco04g2845 243 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Acco04g2845 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Acco04g2845 243 Coils Coil 90 110 - -
Acco04g2845 243 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2845 Acco-ChrAcco04 45089188 45096110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2845 1 192 MADS-box Gene Family AT1G26310 64.975 3.88e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco04g2845 K-box 4.7e-27 No_clan