Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2843 ATGGATTCTTTGAGATACGGTTCTGGAGACAAGGGTTTTGTGCCCAATAATACACTTCCACCTCCTAATACGCTTGCGAGAACCAAAAATTCCTTACTAGGTTGGGAATTGAAAACCCAACCTGGTTTTTCCAATGACTTTTTGGACTCGGCTCAACAACATCTAGAGAGTCAAGTTTGTGAGGAAATGGGATTTCCTGAAATGTTGGGGAAACATCAGTTGTCTAATGACCCGCTTGGTTGTATTTTGAATTATCCAAATTCATTTTCTGGAGGTGAAGACTCTGCTTCAAGGCTTTCAAACTCTGGGGTTGAATCTAATAGCCGGGATCCTCTCATTGATTTGAAGTTAGGGAGAGTTACTGATCAAAAAGATGCCACTGAATCACCATTTTCTAAAGGTATTCCTCTTTTGTGTTCGTCAGAGTCGTCTACGACCCCCAAGAGAGTTAGAACTTCAGGGGTTCAGTCACAGACTTCTTACTGCCAAGTCTATGGCTGCAATAAGGATCTAAGCGCCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGATTCACTCAAAGACTTCTAAAGTCATAGTGAATGGCCTGGAGCAAAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGCTGGCTGAATTTGATGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGTCGTAGAAAGCCACAAATGAGTACTCACTCTGGAAAGGGCAGGAGGTTGCTTCAGTCATATAATGATAGCAGATTCCAAGGCAGCATGCTAACGACAGCATCTTTTATCTGCCAAGAGATACTCCCTAGTGGGGTTTTGTACGGCGCTGATAACTGGTGGAAACCTATAAAGTCCCAAGGTGGGAATGATTCTAGGCATATCTCTGCTATGCCTATCACAAATGGGCATTCACACTCAAGACCTCTGCTTCCTTCATATGTTGAAAAGCAATATCCACCTATGAATGAAACCGACGCCGCTATATCCACTACGGAAAGCATATTCTGTGAGAACAACAGCCTGTATCCACCTGCTCTTGGATATGCTTATTCTTCCGGTCCACGATCATCGTACCAAGACACCTTCTTAGGAAGTGAAGACTTTAATAATGTTTTTGATACAGCATCAACCATTCAGGGATTATCAGGACTCACAGACTCAGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCATAAGTCATCAAGCCATTCATTGGCAATCCCTGCTGGTCGCCCCGTGGTTACTCCGGGTAGCCACGGCCACTACAGCCTGAGTCATGCCTCTGAAAAGATCATGGGAATAAACTCTCAGGCTTCAACAGGTGGGGTGTCAGCATCAGGTAGTCTTCCATTAGAAATAAATCATTCTGATGGAGGTCGCTTTGGCCCTGTGTTGATATTGGACAATAATGACATTGTCAACTTAGAAATCACGGATGGTATTTTTCAAGTGTCAGATGTTGTGAATATGAAAGCCTGCGAAGACGGCCCCACTATCGACTTGCTTCAACTGTCATCACAATTTCACCGAGTCGAGCATCAACGACAATCCTTGCAGGTGAAGCAAGAACATGATTCTATCTGCTCCCTCCGGATTACTTAG 1620 0.4414 MDSLRYGSGDKGFVPNNTLPPPNTLARTKNSLLGWELKTQPGFSNDFLDSAQQHLESQVCEEMGFPEMLGKHQLSNDPLGCILNYPNSFSGGEDSASRLSNSGVESNSRDPLIDLKLGRVTDQKDATESPFSKGIPLLCSSESSTTPKRVRTSGVQSQTSYCQVYGCNKDLSACKDYHKRHKVCEIHSKTSKVIVNGLEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNERRRKPQMSTHSGKGRRLLQSYNDSRFQGSMLTTASFICQEILPSGVLYGADNWWKPIKSQGGNDSRHISAMPITNGHSHSRPLLPSYVEKQYPPMNETDAAISTTESIFCENNSLYPPALGYAYSSGPRSSYQDTFLGSEDFNNVFDTASTIQGLSGLTDSGCALSLLSSQSHKSSSHSLAIPAGRPVVTPGSHGHYSLSHASEKIMGINSQASTGGVSASGSLPLEINHSDGGRFGPVLILDNNDIVNLEITDGIFQVSDVVNMKACEDGPTIDLLQLSSQFHRVEHQRQSLQVKQEHDSICSLRIT 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2843 539 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Acco04g2843 539 Pfam SBP domain 162 235 IPR004333 GO:0003677
Acco04g2843 539 Gene3D - 152 223 IPR036893 GO:0003677|GO:0005634
Acco04g2843 539 SUPERFAMILY SBT domain 161 240 IPR036893 GO:0003677|GO:0005634
Acco04g2843 539 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 87 522 IPR044817 GO:0003677
Acco04g2843 539 FunFam Squamosa promoter-binding-like protein 14 153 223 - -
Acco04g2843 539 MobiDBLite consensus disorder prediction 227 247 - -
Acco04g2843 539 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2843 Acco-ChrAcco04 45060463 45064013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2843 113 279 SBP-box Gene Family AT1G69170 53.293 3.68e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco04g2843 SBP 3.8e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2843 04 45060463 45064013 Acco04g2843 04 45060463 45064013 ECH