Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2842 ATGGCCAACCTTCCCCTCGACGAACATATCTTGCCGATAATTCTAATCGCCGGTTTGATTTTCTATATTTTCTATTTCATTTATCAAATCCGCGTCGGCCGCTTCCGCCTCCGCCACCACCATCTAACCTACCCTTCCTCTCCCGATCTCAGTCCCTATTATTCTCCTGCTCCCGCCAATTCTCCTCTTGAACCTTGGCTTTTCGAGCGCCTTCCTACCTTCACTTACTCCTCCTCCTTCACAACCGTCGAAGCAGACGAACAGAGTGACCCCTCGCTGGAGTGTGTCGTCTGCTTGGACGAGTTCAATGAAGGAGACTTACTACGAGTGCTCCCGAATTGCGACCACTTCTTTCACCTCAATTGCATCGATAAATGGCTCCGAAGAAACAAGACTTGCCCGTTGTGCCGAGAGGCCGTCAAACCCCCGTCACGGCATGAAAATACAGAAGCGTCTGCTGGAGAAGAAGGTCGGTGGGAGACTTTGTCGAATGTAGATCTTCCTCCGCAAATTTGGTGCTCCAGGAACTCATGTCAGGTGATAACCTTAGAACAAGTGGTAATAGAGATTCCCGAGGAAGACCATTGCGAGAGGTAG 597 0.5025 MANLPLDEHILPIILIAGLIFYIFYFIYQIRVGRFRLRHHHLTYPSSPDLSPYYSPAPANSPLEPWLFERLPTFTYSSSFTTVEADEQSDPSLECVVCLDEFNEGDLLRVLPNCDHFFHLNCIDKWLRRNKTCPLCREAVKPPSRHENTEASAGEEGRWETLSNVDLPPQIWCSRNSCQVITLEQVVIEIPEEDHCER 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2842 198 CDD RING-H2_EL5-like 94 137 - -
Acco04g2842 198 Pfam Ring finger domain 94 137 IPR001841 -
Acco04g2842 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 147 - -
Acco04g2842 198 SMART ring_2 95 136 IPR001841 -
Acco04g2842 198 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Acco04g2842 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 143 IPR013083 -
Acco04g2842 198 SUPERFAMILY RING/U-box 80 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2842 Acco-ChrAcco04 45056627 45057223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2842 10 140 C3H Transcription Factor Family AT1G04360 35.714 5.19e-22 90.1