Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2840 ATGGCTGTCGATGATGATTTTTTCGAACTGAAAAGCCTCGCCGCTTTCGGAATAATGATTGGTATCTTTTTCCTTTGGAAATTGTACAGTCCCTGTTGTCTCCGCCGCCTCTGTGGCCTCCGCCGCCGCCCCTCTCGAAGCCGTTCCTTTGCCGATAATCACATTCAACATCCTCGTGCTCCAATCCGTTCTCCCCTTCATCCTTCGCTTTTCCGTCTCCTTCCCACCTCCACCTACTCCGTCGCCGCAGCCGCCGGAGCAGACGAGCACAGTCAAGCTCCGCCAGAGTGTGCCATCTGCTTGGACGAGTTCGAAGAAGGAGACACAGGGCGACTGCTCCCGAACTGCGACCACTTCTTTCACCTTCATTGCATCGATAACTGGCTCCGAACAAACAAGACTTGCCCATTGTGCCGACAGGTCGTCAGGCCGCGGCCGCCAAGGCTTCAAAAAAAGAAACCGCCGCCGCCGCCTGAAAATGCAGAAGCGTCTGCTGGGGAAGAAGGTCAGTCGGAGAATGTAAATCTTCCTCCGCCAATTTGGTGCCCCAGAAACCCAAGGCAGCAGGTGATAGAATCCGAACAAGTGGTAATAGAGATTCCTGAGGAAGACCATCGACGGAGTCAGAGGCAGATCACGTCGTTGCGAGAGTTAGCGCGGTTGTCGTTATCTTAA 675 0.5422 MAVDDDFFELKSLAAFGIMIGIFFLWKLYSPCCLRRLCGLRRRPSRSRSFADNHIQHPRAPIRSPLHPSLFRLLPTSTYSVAAAAGADEHSQAPPECAICLDEFEEGDTGRLLPNCDHFFHLHCIDNWLRTNKTCPLCRQVVRPRPPRLQKKKPPPPPENAEASAGEEGQSENVNLPPPIWCPRNPRQQVIESEQVVIEIPEEDHRRSQRQITSLRELARLSLS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2840 224 MobiDBLite consensus disorder prediction 146 181 - -
Acco04g2840 224 CDD RING-H2_EL5-like 96 139 - -
Acco04g2840 224 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Acco04g2840 224 Pfam Ring finger domain 96 139 IPR001841 -
Acco04g2840 224 SUPERFAMILY RING/U-box 90 145 - -
Acco04g2840 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 145 IPR013083 -
Acco04g2840 224 PANTHER RING-H2 FINGER PROTEIN ATL16 11 210 IPR044600 GO:0016567|GO:0016740
Acco04g2840 224 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2840 Acco-ChrAcco04 45044505 45045179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2840 10 146 C3H Transcription Factor Family AT2G42360 37.956 1.78e-21 87.4