Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2833 ATGGGCTCAACCAGTGAAACAGCTCCTCTCTCAGAGCGCAAGGAAAAGGAAAAGAGCCAAAGTGGCTCATTGAGTGAACTGACAGACCTTGAACGTGGTGAAGCAGCAAAGCCTGAAACTGGGAAGCTGATTTTCGCAACTCTGGCTCTTTTAGTTGCATCCACATCAGATATTTTAATTGTATGTGTCACAATTGAACCCTATCTCATATCAGTTTCAACAGCACTTGATGGTTGGCTTTTTTCCTCAGCAAGTGAAAGGGTTGTCGCTCGGCTTAGAAAAAGGTTATTTAGTCACCTCACAATCCAGGAGATAGCCTTCTTTGATGTTACCCGTACCGGGGAACTTATGAGTAGGCTCTCTGAAGATACACAGATCATAAAAAGTGCAGCAACTACCAATCTTTCTCATGCACTGAGTGCCTTATCAACTGCATTTATTGGTCTTGGCTTCATGTTTTTGACGTCATGGAAGTTAACATTGTTGGCTTTAGCTGTTGTTCCTGCTACTTTTATTGCTGTCCGTAAATTCGGTTGTTTCCTACGTGATCTTTCTCAGAAAACTCAAGATGCAGCTGCAGCAGCTGCTTCAATAGCTGAGGAATCCTTTGGCGCCATAAGGACTGTAAGATCTTTTGCCCAAGAAGAATATGAAATATCACGCTACTCTAAGAAAGTTGATGAGACACTTAAGCTTGGGCTTAAACAAGCTAAAGTTGTGGGACTCTTTTCTGGAGGCATTTACACAGCAATTTCCTTGCCAATTATTATAGTTGTCATCTATGGGGCATATTTGACAACTACAGGTTCCATGTCCCCCGGTGATCTTACGTCCTTCATTCTTTTTAGTCTCACAGTGGGACTTTATATATCTGGTCTCTCAGGATTGTATACCATGGCCATGAAAGCTGTGGGTGCAAGCAGAAGGGTGTTTCACCTTCTTGATCTTGAATCATCAATGCCAATGTCTGGAAATAAATGTCCTATGGGAGAGCAAAATGGGGAGGTGGAGCTAAATGATGTCTGGTTTGCATATCCATCTCGTCCCAGTCATATGGTACTTAAGGGAATTACAATGAAATTGCTGCCTGGCTCAAAGGTTGCTCTTGTTGGTCATAGTGGTGGTGGAAAGACGACAATAACAAACTTAATTGAAAGATTCTACGACCCAACCAAGGGAAAGATCCTGCTGAATGGGGTTCCACTGGTAGAAGTATCAAATGAGCATCTGCACAAGAAGAAAATGGCAAATGCACATGAATTCATATCAAAATTCACAGATAAATACAAGACCCATGTTGGGGAGCGTGGGGTATGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCCAGAGCTCTACTTATGGACCCAAAAATTCTTCTCCAGGATGAAGCCACTAGTGCCCTTGATGCTGAAAGCGAATATTTAGTACAGCTATCAACTGTGAAGAGTGCTGATAGAGTAATGGTTGTTTCTTATGGTGAAATTGTGGAGAGTGGGACCCATGAAGAACTTCTCAGCAACAATGGTGTCTATTCTGCTTTAGTCAGTAGACAGCTCCAAACAGTGAAACCTCCATATCTTGTATCTTAG 1596 0.4248 MGSTSETAPLSERKEKEKSQSGSLSELTDLERGEAAKPETGKLIFATLALLVASTSDILIVCVTIEPYLISVSTALDGWLFSSASERVVARLRKRLFSHLTIQEIAFFDVTRTGELMSRLSEDTQIIKSAATTNLSHALSALSTAFIGLGFMFLTSWKLTLLALAVVPATFIAVRKFGCFLRDLSQKTQDAAAAAASIAEESFGAIRTVRSFAQEEYEISRYSKKVDETLKLGLKQAKVVGLFSGGIYTAISLPIIIVVIYGAYLTTTGSMSPGDLTSFILFSLTVGLYISGLSGLYTMAMKAVGASRRVFHLLDLESSMPMSGNKCPMGEQNGEVELNDVWFAYPSRPSHMVLKGITMKLLPGSKVALVGHSGGGKTTITNLIERFYDPTKGKILLNGVPLVEVSNEHLHKKKMANAHEFISKFTDKYKTHVGERGVWLSGGQKQRIAIARALLMDPKILLQDEATSALDAESEYLVQLSTVKSADRVMVVSYGEIVESGTHEELLSNNGVYSALVSRQLQTVKPPYLVS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2833 531 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 336 519 IPR003439 GO:0005524
Acco04g2833 531 Gene3D ABC transporter type 1, transmembrane domain 29 315 IPR036640 GO:0005524|GO:0016020
Acco04g2833 531 Gene3D - 413 522 IPR027417 -
Acco04g2833 531 Pfam ABC transporter 354 413 IPR003439 GO:0005524
Acco04g2833 531 Pfam ABC transporter transmembrane region 71 285 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco04g2833 531 ProSitePatterns ABC transporters family signature. 440 454 IPR017871 GO:0005524|GO:0016887
Acco04g2833 531 MobiDBLite consensus disorder prediction 1 31 - -
Acco04g2833 531 SMART AAA_5 363 527 IPR003593 GO:0016887
Acco04g2833 531 FunFam ABC transporter B family member 25 59 333 - -
Acco04g2833 531 Pfam ABC transporter 416 468 IPR003439 GO:0005524
Acco04g2833 531 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 59 412 IPR039421 -
Acco04g2833 531 SUPERFAMILY ABC transporter transmembrane region 65 316 IPR036640 GO:0005524|GO:0016020
Acco04g2833 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 520 IPR027417 -
Acco04g2833 531 Gene3D - 329 409 IPR027417 -
Acco04g2833 531 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 302 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2833 Acco-ChrAcco04 44969681 44975502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2833 79 520 Calmodulin-binding Proteins AT2G36910 33.600 1.18e-68 238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2833 04 44969681 44975502 Acco04g2833 04 44969681 44975502 ECH