Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2832 ATGGACTCAACAAGTGAAACAGCTCCTCTCTTAGAGCGCAAGGAAAAGGAAAAGAGCCAAAGTGGCTCATTGAGTGAACTGACAGACCTTGAACGTGGTGAAGCAGCAACAAATGTGGGATTTGGCAGGGTGCTCTCACTTGCAAAGCCTGAAACTGGGAAGCTGATTTTCGCAACTCTGGCTCTTTTAGTTGCATCCACATCAGATATTTTAATTCCAAAATTTGGTGGGAAGATAATTGATATTGTCTCGGGGGATATTCAAACTCCTGAAGATAAAGCTAAAGCTTTGGAAGCTGTCAAGAGCACCATACTGTACATTTTTATGATTGTTGTTGTTGGATCAGTTTCAACAGCACTTGATGGTTGGCTTTTTTCCTCAGCAAGTGAAAGGGTTGTCGCTCGGCTTAGAAAAAGGTTATTTAGTCACCTCACAATCCAGGAGATAGCCTTCTTTGATGTTACCCGTACCGGGGAACTTATGAGTAGGCTCTCTGAAGATACACAGATCATAAAAAGTGCAGCAACTACCAATCTTTCTCATGCACTGAGTGCCTTATCAACTGCATTTATTGGTCTTGGCTTCATGTTTTTGACGTCATGGAAGTTAACATTGTTGGCTTTAGCTGTTGTTCCTGCTACTTTTATTGCTGTCCGTAAATTTGGTTGGTTCCTACGAGATCTTTCTCAGAAAACTCAAGATGCAGCTGCAGCAGCTGCTTCAATAGCCGAGGAATCCTTTGGCGCCATAAGGACGGTAAGATCTTTTGCCCAAGAAGAATATGAAATATCACGCTACTCTAAGAAAGTTGATGAGACACTTAAGCTTGGGCTTAAACAAGCTAAAGTTGTGGGACTCTTTTCCGGAGGCATTTACACAGCAACTTCCTTGCCAATTATTATAGTTGTCATCTATGGGGCATATTTGACAACTACAGGTTCCATGTCCCCCGGTGATCTTACGTCCTTCATTCTTTATAGTCTCACAGTGGGACATTCTATATCTGGTCTCTCAGGATTGTATACCATGGCCATGAAAGCTGTGGGTTCAAGCAAAAGGGTGTTTCACCTTCTTGATCTTCAATCATCAATGCCAATGTCAGGAAATAAATGTCCTCTGGGAGAGCAAGATGGGGAGGTAGAGCTAAATGATGTCTGGTTTGCATATCCATCTCGTCCTAGTCATATGGTACTTAAGGGAATTACAATGAAATTGCTGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGACGACAATAGCATACTTAATTGAAAGATTCTACGACCCAACCAAGGGAAAGATCCTTCTGAATGGGGTTCCGCTGGTAGAAGTATCACATGAGCATCTGCACAAGAAGATCAGTATTGTGAGTCAAGAGCCTGTACTTTTCAACTGTTCCATTGAGGAGAACATAGCTTATGGATTTTATGGCAAAGTAAATCCTGCTGATATAGAAAATGCAGCGAAAATGGCAAATGCACATGAATTCATATCAAAATTCACAGATAAATACAAGACCCATGTTGGGGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCCAGAGCTCTGCTTATGGACCCAAAAATCCTTCTCCTGGATGAAGCCACTAGTGCCCTTGATGCTAAAAGTGAATATTTAGTACAGGATGCTCTGGACAGATTGATGAAGGGAAGGACAGTTCTAGTCATCGCTCATAGGCTGTCAACTGTGAAGAGTGCTGATAGAATAGTGGTTGTTTCTGATGGTGAAATTGTGGAGAGTGGGACCCATGAAGAACTTCTCAGCAACAACAATGGTGTCTATTCTGCTTTAGTTAGTAGACAGCTCCAAACAATGAAGCCTCCATATCTTGTTTCTTAG 1893 0.4247 MDSTSETAPLLERKEKEKSQSGSLSELTDLERGEAATNVGFGRVLSLAKPETGKLIFATLALLVASTSDILIPKFGGKIIDIVSGDIQTPEDKAKALEAVKSTILYIFMIVVVGSVSTALDGWLFSSASERVVARLRKRLFSHLTIQEIAFFDVTRTGELMSRLSEDTQIIKSAATTNLSHALSALSTAFIGLGFMFLTSWKLTLLALAVVPATFIAVRKFGWFLRDLSQKTQDAAAAAASIAEESFGAIRTVRSFAQEEYEISRYSKKVDETLKLGLKQAKVVGLFSGGIYTATSLPIIIVVIYGAYLTTTGSMSPGDLTSFILYSLTVGHSISGLSGLYTMAMKAVGSSKRVFHLLDLQSSMPMSGNKCPLGEQDGEVELNDVWFAYPSRPSHMVLKGITMKLLPGSKVALVGPSGGGKTTIAYLIERFYDPTKGKILLNGVPLVEVSHEHLHKKISIVSQEPVLFNCSIEENIAYGFYGKVNPADIENAAKMANAHEFISKFTDKYKTHVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAKSEYLVQDALDRLMKGRTVLVIAHRLSTVKSADRIVVVSDGEIVESGTHEELLSNNNGVYSALVSRQLQTMKPPYLVS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2832 630 Pfam ABC transporter 398 548 IPR003439 GO:0005524
Acco04g2832 630 SUPERFAMILY ABC transporter transmembrane region 43 359 IPR036640 GO:0005524|GO:0016020
Acco04g2832 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 619 IPR027417 -
Acco04g2832 630 FunFam ABC transporter B family member 25 378 621 - -
Acco04g2832 630 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco04g2832 630 MobiDBLite consensus disorder prediction 1 27 - -
Acco04g2832 630 MobiDBLite consensus disorder prediction 7 22 - -
Acco04g2832 630 CDD ABC_MTABC3_MDL1_MDL2 380 619 - -
Acco04g2832 630 Gene3D - 374 624 IPR027417 -
Acco04g2832 630 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 617 IPR003439 GO:0005524
Acco04g2832 630 PIRSF ABC_prm/ATPase_B 2 627 - -
Acco04g2832 630 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Acco04g2832 630 FunFam ABC transporter B family member 25 107 377 - -
Acco04g2832 630 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 13 622 IPR039421 -
Acco04g2832 630 Gene3D ABC transporter type 1, transmembrane domain 39 369 IPR036640 GO:0005524|GO:0016020
Acco04g2832 630 SMART AAA_5 407 594 IPR003593 GO:0016887
Acco04g2832 630 CDD ABC_6TM_AtABCB27_like 58 354 - -
Acco04g2832 630 Pfam ABC transporter transmembrane region 55 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2832 Acco-ChrAcco04 44963364 44967471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2832 72 619 Calmodulin-binding Proteins AT2G36910 37.163 2.12e-99 328