Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2813 ATGTCAAAGTCAGTGACTCCGGATGCGATTTCGATCTTGTTGGCGAATCCATCCCCGGATTCTTCAACAGAGCTTCCCGAGATCGTCGTCCAAGTCCTGGATCTCAAGCAAAGTGGTAACAGATACATGCTTACTGCAAGCGATGGGAGATTGAAATTAAGAGCAATTCTACCCTCTTATCAGAATTCTCAAGTCATCTCAGGAAATATTGAGAACCTGGGGCTTATTCGCATTATTGACTATACTCTCAAAGACATCCCAAATAAGTCAGAAAAGTATCTTATTGTGACAAAGTGTGAACCAGTCTCCCCCGCACTTGAAATGGAAATAAAGCAAGAGATAAAGACAGAGGAAACTGGCATTTTTTCGGAACAAGAGCAAGAGGACGGAATGAAAAGTGAGGTAAAAACTGAAGGAGCAGGCCTTCTTTTGAAACCAAGACAAGAAATCGTGGCCAAGTCTGCTGCTCAGATCGTAAATGAACAGCGCGGAAATATGGTCCCTGCACCTCGAATGGCCATGACTCGCAGGGTGCGGCCTCTGGTTAACTGGACAATAAAAGTTCGGGTTACAGACAAAGGAATCATGCGCACCTATAAGAACGCAAGAGGGGAAGGCTGTGTCTTCAACGTGGAACTGACAGACGAAGATGGAACTCAAATTCAAGCAACTATGTTTAATGAAGCTGCAAGGAAATTCTATGAAAAATTTGTGTTGGGGAAGGTTTACTACATTTCAAAGGGTACTTTAAAAGTCGCCAACAAGCAGTTCAAAACCGTTCAAAATGATTACGAAATGACACTAAATGAGAACTCTGAAGTGGAAGAGGCAACCAATGAAGAAAGCTTTGTTCCAGAAACAAGGTTCAAGTTTGTCCCCATTGATCAGCTGGGTCCTTATGTCAACAAAAATGAACTTGTCGATGTCATTGGAATTGTTCAAAACGTGTCTCCTACAATGAGCATACGCAGAAAGAGCAACAATGAAACTGTCCCAAAGCGTGATATTACTATTGCTGATGAGACAAAGAAAACAGTTATAGTGTCTTTGTGGAATGAGAATGCGACTAAAGTAGGGGAGGAATTGTTGGATCTTGTTGGTTATTCTCCTATAGTAGCAATCAAATCGCTCAAGGTTGGGGACTTTCAAGGTGTTTCCTTGTCGACTATAAGTAAAAGTCTAGTGCTGGTAAATCCAGACATACCTGAAGCAAAGAAGCTTAGATGCTGGTACGATTCTGAAGGTAAAGATGTATCATTGGCACCCATAAGCACGGGCACAAGCTCGGTATCCATGAATGGAATGAGATCAGTGTATTCAGACCGTGTTTCACTTTCTCATATTACCTCAAACCCATCCTTAGGGGAGGACAAGCCTGCATTTTTCAGCATTAGGGCACATATAAGCTACATCAAGCCTGACCAGACAATGTGGTACCGAGCTTGTAAAACTTGCAACAAGAAAGTCACCGAATCCATCGGCGCTGGGTATTGGTGTGAAGGCTGCCAGAAAAATTATGAAGAGTGCAGTTTAAGTGTTTCTCAAAATGAATACAATAATGAGAAAAGGCAGAGGATAACAGCCCGGGCAGTTGTACCGATGGACTTTGCTGCTGAATCAAGATTTCTCTTGGAAGAGATATCAAAGATGAGAGCTTCACAATAA 1665 0.4234 MSKSVTPDAISILLANPSPDSSTELPEIVVQVLDLKQSGNRYMLTASDGRLKLRAILPSYQNSQVISGNIENLGLIRIIDYTLKDIPNKSEKYLIVTKCEPVSPALEMEIKQEIKTEETGIFSEQEQEDGMKSEVKTEGAGLLLKPRQEIVAKSAAQIVNEQRGNMVPAPRMAMTRRVRPLVNWTIKVRVTDKGIMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEATNEESFVPETRFKFVPIDQLGPYVNKNELVDVIGIVQNVSPTMSIRRKSNNETVPKRDITIADETKKTVIVSLWNENATKVGEELLDLVGYSPIVAIKSLKVGDFQGVSLSTISKSLVLVNPDIPEAKKLRCWYDSEGKDVSLAPISTGTSSVSMNGMRSVYSDRVSLSHITSNPSLGEDKPAFFSIRAHISYIKPDQTMWYRACKTCNKKVTESIGAGYWCEGCQKNYEECSLSVSQNEYNNEKRQRITARAVVPMDFAAESRFLLEEISKMRASQ 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2813 554 CDD RPA1_DBD_C 445 549 IPR047192 -
Acco04g2813 554 Gene3D - 424 512 IPR012340 -
Acco04g2813 554 Gene3D - 179 279 IPR012340 -
Acco04g2813 554 Gene3D - 4 114 IPR012340 -
Acco04g2813 554 SUPERFAMILY Nucleic acid-binding proteins 289 418 IPR012340 -
Acco04g2813 554 Pfam OB-fold nucleic acid binding domain 184 270 IPR004365 GO:0003676
Acco04g2813 554 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Acco04g2813 554 SUPERFAMILY Nucleic acid-binding proteins 183 280 IPR012340 -
Acco04g2813 554 FunFam Replication protein A subunit 283 422 - -
Acco04g2813 554 Pfam Replication factor-A C terminal domain 461 511 IPR013955 -
Acco04g2813 554 Pfam Replication protein A OB domain 301 397 IPR031657 -
Acco04g2813 554 PANTHER REPLICATION FACTOR A 1, RFA1 184 511 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco04g2813 554 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Acco04g2813 554 SUPERFAMILY Nucleic acid-binding proteins 440 550 IPR012340 -
Acco04g2813 554 CDD RPA1_DBD_A 183 276 - -
Acco04g2813 554 Gene3D - 284 423 IPR012340 -
Acco04g2813 554 CDD RPA1_DBD_B 306 412 - -
Acco04g2813 554 FunFam Replication protein A subunit 177 279 - -
Acco04g2813 554 NCBIfam replication factor-a protein 1 (rpa1) 3 511 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco04g2813 554 FunFam Replication protein A subunit 4 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2813 Acco-ChrAcco04 44800855 44804223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2813 1 511 Core DNA Replication Machinery Family AT5G08020 66.859 0.0 736