Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2775 ATGGGGGGTGGTGGTGGTGAGAAGGAGCAAAGTACAATGCCCTTGGAGATTGCAATTCAGAAGGAGCTAATGTATCGGAGGAAGGTCACTTCATCATCAATTCAAACTCTCCGGCAATCTCCATTATCAAGCCTTCTAAATTCAAGTCCATGTCTTTCAGGAACCAAGCGAAAAGAACCAATCAATCCACATGATCTCCCACTGGAATGTCAGAACCAAGATAAGTTATACTGCAAAATCTGCAAATTGTCTTGCTCAAGTCCCTCCAATCTAACACAACATTTGATGGGTCGAAAGCACAAGTCAAAGCTAAAAGATCAAGACTTGGAACATGATCAGAAGAATGGAAAGGAGGGGAGAAGCAATCAAATTCACTGGTGTGAACTGTGTAAAGTTCCATGCATGACTGAAGATTTGCTTAATCTGCACTATAAAGGTAAAAAACATAGGATTGAACAACAGAAGTTTGAAATAAGCAAGGAAAAAGGAGGAGAGACAACTAGTCACAGAAAATGGTGTGAGCTATGCAAAATATGGTGCATTGATATGTGTGCTTACAAGCAGCATCTTGAAGGCAAAAAGCACCTTCTCCAGATGAATATTATGGAGAAAAACAAGACACGTCCTGATATGTTGTGGCCTAATTCAATTGGGTCACAAGCTGACGAAATGATGAATGAGATGGCAAATGCTAGAAACTTGAGGCAAGCACTAGATGTCTTGCGAAGGAGTACCAGGGTACGAGAGATGCCATAA 756 0.4114 MGGGGGEKEQSTMPLEIAIQKELMYRRKVTSSSIQTLRQSPLSSLLNSSPCLSGTKRKEPINPHDLPLECQNQDKLYCKICKLSCSSPSNLTQHLMGRKHKSKLKDQDLEHDQKNGKEGRSNQIHWCELCKVPCMTEDLLNLHYKGKKHRIEQQKFEISKEKGGETTSHRKWCELCKIWCIDMCAYKQHLEGKKHLLQMNIMEKNKTRPDMLWPNSIGSQADEMMNEMANARNLRQALDVLRRSTRVREMP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2775 251 SUPERFAMILY beta-beta-alpha zinc fingers 116 152 IPR036236 -
Acco04g2775 251 Gene3D Classic Zinc Finger 156 207 - -
Acco04g2775 251 Gene3D Classic Zinc Finger 68 110 - -
Acco04g2775 251 Pfam Zinc-finger of C2H2 type 172 195 - -
Acco04g2775 251 Pfam Zinc-finger of C2H2 type 76 100 - -
Acco04g2775 251 Pfam Zinc-finger of C2H2 type 126 149 - -
Acco04g2775 251 SUPERFAMILY beta-beta-alpha zinc fingers 74 108 IPR036236 -
Acco04g2775 251 MobiDBLite consensus disorder prediction 96 118 - -
Acco04g2775 251 SUPERFAMILY beta-beta-alpha zinc fingers 157 199 IPR036236 -
Acco04g2775 251 PANTHER ZINC FINGER RNA-BINDING PROTEIN 116 206 - -
Acco04g2775 251 Gene3D Classic Zinc Finger 111 155 - -
Acco04g2775 251 SMART ZnF_U1_5 73 107 IPR003604 GO:0003676|GO:0008270
Acco04g2775 251 SMART ZnF_U1_5 122 156 IPR003604 GO:0003676|GO:0008270
Acco04g2775 251 SMART ZnF_U1_5 168 202 IPR003604 GO:0003676|GO:0008270
Acco04g2775 251 MobiDBLite consensus disorder prediction 101 118 - -
Acco04g2775 251 ProSitePatterns Zinc finger C2H2 type domain signature. 78 100 IPR013087 -
Acco04g2775 251 SMART c2h2final6 125 149 IPR013087 -
Acco04g2775 251 SMART c2h2final6 76 100 IPR013087 -
Acco04g2775 251 SMART c2h2final6 171 195 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2775 64 162 C2H2 Transcription Factor Family AT2G19380 26.667 3.82e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco04g2775 zf-met 1.1e-06 CL0361