Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2766 ATGGCGGATGAGGAATCGGCTTCGTCTCCTACAGTGTTGAGCATGGAGGTTCTTGACGATGTGGAGGACTACGATTTGGTATATGAACCGGAGGATTTGACAAGGCAAACATACCTTCATGTTTATGAACTTGTGCAGAATGGCAATGCTGCATTTCGGAATAACCATATGGAAGAGGCCATCAACTTTTACTCGAGAGCAAATAGCATCAGGACTGGTGATCCTGTTATACTCAGCAACCGAAGTGCTGCTTACATCAGGATTAGCCGATTCTTAAAACAAAGACCTCCATCAGCTTCAGAATATAGTCCGTTGAGTGGGCTGGACCCTACAACACATGCTGAACTTGGTTTGAAGGACGCTGAGAAGCTTGTCAACATCCGAAGTGGTTCAGTAAAATCATACCTTTTAAAGGCCAACACTCTTTTTCTGTTAGAGAAATATGAGATGGCTCGTGATGTTATTCTTTCAGGTCTTCAAGTCGATCCATATAGTAATTCTCTCCGGGTTTCTCTTTCAAACCTGGAAAGAGCGCTGGCTAGTTTGGCAAGGATGAGTACACATGGACAGCCAGAGCGCACTGATGACTTTGATTGCACTCTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCCTGTGGACATTCTTTTTGCCGGTCATGTCTATTCCAGTCAATAGACCGTGGCAACAGGTGCCCATTGTGCAGGACAGTTCTGTTTATTAGTTCTAGAACATGTTCTGTCAGTGTAACGTTGAAAAACATTATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTGACCAACTTGGGCTTAGATTTGATCCCTCTCTTTGTCATGGATGTTGTCATTCCTTGTCAAAAGTTCCCACTCCATATATTTGAGCCCCGTTATAGACTGATGGTAAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATAATCGACTCTGAAACAGATTCCCTAGCTGAGTTTGCCTGTGAAGTGGAAATTACTGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGTAGGAGATTTCGGATCATCCGATCATGGGATCAAGATGGGTATCGTGTTGCAAAGGTTGAATGGATTCAGGATATTATGCCATTGGAAGAAGGTACGAGGGAGAGAGAAGATTTGCTGGAAATAACAAATAATGCAGCAGAAATTGCTCGATCGTGGATCAGGAGGGCTAAAGAAGCAGCAGGACAAGATCAAAGAAGACTCGAGAGACTGTTGAATGTTGAAGTGATGATGCCCCCGCTACAAGATCCTGAGCGCTTCAGTTTCTGGCTTGCTACCTTGTCAAACCGGAGGCCCTCAGAAAAACTGGATCTTCTGCGATTGAGAGATACCAAAGAGAGGATCCGGCGTGGTTTGATATTTTTGCGAGCCGGGGAACAAGACTGCAGCATCCAATAG 1473 0.4386 MADEESASSPTVLSMEVLDDVEDYDLVYEPEDLTRQTYLHVYELVQNGNAAFRNNHMEEAINFYSRANSIRTGDPVILSNRSAAYIRISRFLKQRPPSASEYSPLSGLDPTTHAELGLKDAEKLVNIRSGSVKSYLLKANTLFLLEKYEMARDVILSGLQVDPYSNSLRVSLSNLERALASLARMSTHGQPERTDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSIDRGNRCPLCRTVLFISSRTCSVSVTLKNIIQKNFPEEYAERKQENDSLTNLGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSETDSLAEFACEVEITECEPLPDGRFYIEIESCRRFRIIRSWDQDGYRVAKVEWIQDIMPLEEGTREREDLLEITNNAAEIARSWIRRAKEAAGQDQRRLERLLNVEVMMPPLQDPERFSFWLATLSNRRPSEKLDLLRLRDTKERIRRGLIFLRAGEQDCSIQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2766 490 Gene3D Tetratricopeptide repeat domain 40 178 IPR011990 GO:0005515
Acco04g2766 490 SUPERFAMILY TPR-like 42 179 IPR011990 GO:0005515
Acco04g2766 490 SUPERFAMILY RING/U-box 193 262 - -
Acco04g2766 490 SMART ring_2 199 236 IPR001841 -
Acco04g2766 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 278 IPR013083 -
Acco04g2766 490 ProSiteProfiles Lon N-terminal domain profile. 280 482 IPR003111 -
Acco04g2766 490 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Acco04g2766 490 Pfam ATP-dependent protease La (LON) substrate-binding domain 283 480 IPR003111 -
Acco04g2766 490 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
Acco04g2766 490 Gene3D - 281 383 IPR046336 -
Acco04g2766 490 SMART lon_5 282 482 IPR003111 -
Acco04g2766 490 SUPERFAMILY PUA domain-like 283 480 IPR015947 -
Acco04g2766 490 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Acco04g2766 490 PANTHER RING FINGER PROTEIN 127 37 481 - -
Acco04g2766 490 CDD RING-HC_LONFs_rpt2 196 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2766 Acco-ChrAcco04 44452995 44460911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2766 187 240 C3H Transcription Factor Family AT1G74990 35.088 1.14e-09 55.1