Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2762 ATGGCTGAACAAGAAGACAAACGTCATGCCTCTCTTGAGGAAGGGAAGAAGAGGAAAAGGAATAGACCCCGGAAATCTGCAACTGTGGAGCAATTGGAATCTCAAGAGTCAAACCAGCATGGGGAGGAAGAAGGTGAAGAAGACAGAGAGAATGATGGGGATAAGGAGTCTGCTAAGTTGCGTAAGAAAAAGAAGGATAAAAAGACGAAACGTGGTGAAGAATTGACTGTTGGGGAAATGAGCGGCGATGAGAATGAGGAGGAGGGCGAACAAAGGAAGTCAAAGAATGTTGGGTCTGGAATTATGAGCACTGTGTCGTTTGACTCCCTAGGATTGTCCGAACCAACTTTTAAGGCCATTAAGGATATGGGATTCGAGCATACTACTCAGATTCAAGCGAGAGCAATCCCACCCCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACCGGTTCTGGGAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCGCGAAATGGAGCTGGTGTTGTTGTCATTTGCCCTACTAGGGAGCTTGCAATACAGACACATGCCGTAGCAAAAGAACTTCTCAAGTATCACTCCCAAACTCTTGCATTGGTTATTGGCGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATACAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCCAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCTAAGAATAGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAAAAGGTTGAAGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGACGGGAGAACCAAGGTCACTAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTTCATGCAGACCTTCTCAATTATATACAGATTGATTGCTATAATATACATGGAAAACAAAAGCAGCAGACACGTACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGCACTGATGTTGCTGCCCGTGGACTCGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCTAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCGAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGTTGGCAAATGTACAGTCTCACCTGGAAAAGTTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATTTTTAATGTTCATCGCCTTGATTTACAGGCCGTGGCGTCGTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCATAGACAGCGGGGCTTCAAAGCATAGGAAGAAAATGCGTAAGATTGAAGGGAGCAGACATGGATTCAGCGACAGCAATCCTTATGGTAACAAAATTGCTGCTGATGATAACCGCCAATTTGTGAGGCATTAG 1785 0.4252 MAEQEDKRHASLEEGKKRKRNRPRKSATVEQLESQESNQHGEEEGEEDRENDGDKESAKLRKKKKDKKTKRGEELTVGEMSGDENEEEGEQRKSKNVGSGIMSTVSFDSLGLSEPTFKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLANVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVASSFCFSNPPKVSLGIDSGASKHRKKMRKIEGSRHGFSDSNPYGNKIAADDNRQFVRH 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2762 594 CDD SF2_C_DEAD 326 457 - -
Acco04g2762 594 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 311 IPR014001 -
Acco04g2762 594 MobiDBLite consensus disorder prediction 1 17 - -
Acco04g2762 594 CDD DEADc_DDX18 116 313 IPR044773 GO:0003724|GO:0005524
Acco04g2762 594 SMART helicmild6 366 447 IPR001650 -
Acco04g2762 594 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 496 IPR001650 -
Acco04g2762 594 Pfam Domain of unknown function (DUF4217) 488 548 IPR025313 -
Acco04g2762 594 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Acco04g2762 594 MobiDBLite consensus disorder prediction 564 586 - -
Acco04g2762 594 PANTHER RNA HELICASE 57 491 - -
Acco04g2762 594 Gene3D - 322 558 IPR027417 -
Acco04g2762 594 Gene3D - 48 315 IPR027417 -
Acco04g2762 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 461 IPR027417 -
Acco04g2762 594 SMART DUF4217_3 487 550 IPR025313 -
Acco04g2762 594 Pfam Helicase conserved C-terminal domain 341 446 IPR001650 -
Acco04g2762 594 SMART ultradead3 124 329 IPR014001 -
Acco04g2762 594 FunFam RNA helicase 322 553 - -
Acco04g2762 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 312 IPR027417 -
Acco04g2762 594 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 257 265 IPR000629 -
Acco04g2762 594 Pfam DEAD/DEAH box helicase 129 300 IPR011545 GO:0003676|GO:0005524
Acco04g2762 594 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2762 Acco-ChrAcco04 44432919 44438352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2762 106 465 Eukaryotic Initiation Factors Gene Family AT3G13920 30.748 2.11e-46 167