Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2743 ATGCAGGAAATGAAAGACCCTGCTATTAAGCTATTCGGAAAGAAGATTCCATTGCAGGGTGAAGCCCAGGATCCTGCCATTTCCGGCAACGATTCTATCTCACATGTCGCCGTTGATGCCGCGAAAGGAGGAGGAGGGGACGACGGAGGACAGAAAAAACGAAAAGACGACGAAGCAGGCCAGGAATCTGAGATTGGAAAATTCACAGATAGCCCTGAAGATAAGGAGACTGAAGAAAATGCAAAATCTTTTGAGAATGACGATGGAACAAACTCGCAAGAGAAAATCCTGAAGAAGCCAGATCAAGTGCTTCCATGTCCTCGCTGCAACAGCATGAACACAAAGTTCTGTTACTTTAATAACTACAACATCAATCAGCCTCGCCATTTTTGCAAATCCTGTCAAAGATACTGGACAGAAGGTGGCACCATGAGGAACGTTCCAGTAGGAGCAGGACGAAGAAAGACCAAAAACAACAACTCCTCTCATTATCGCTATATCACCATTAATGAAGGTCTTCGAATAGCCAGAATTAGTGCCCCTCATGGAACTAATGGCAAAGTTCTCAGCTTTGGATCAGATTCACCCATGAATTCTGTCCTGAATCTTGCAGAGGACAAAATTGCTTCTAAAAGTACCCAAAATGATGTTCCCTGGCTTGTCCCTCCAGGTTTTCCTCCTCCCCTGTTATCCAATCATCCTGCAGCTTTTTGGAATGCGAATCTTCCGAGGGTTTCCACGAATTTGTCTTGTCCAACCTTAAATTCACCGAGCTGTGGTCGTAATTATTCGATATTGGGAAAGCGCGTGAGAGGTTGGGACATGCTTGAGGCAGGGGATGTGCAGAGAGAAGAAGAAAGGAACCAGAGGAGTGGCTCTGTCTTGGTGCCTAAAACTATGAGGATTAATGACCCAAGTGAGGCTGCTAAGAGTTCAATATGGACAACCTTAGGAATAAAGAAGGAATCATGGAATGGTGGAAGCATGTTTGATGCGTTTCAATCGAGTAAAGATGGGAAGAATCAGAAACATCAAAAGGTTGAAACCTGTCCTGTGTTAAGGGCTAACTCAGCAGCCTTGTCTAGATCCGTTTACTTTCATGAGAACACGGGAATTAGTAGTTCATGA 1128 0.445 MQEMKDPAIKLFGKKIPLQGEAQDPAISGNDSISHVAVDAAKGGGGDDGGQKKRKDDEAGQESEIGKFTDSPEDKETEENAKSFENDDGTNSQEKILKKPDQVLPCPRCNSMNTKFCYFNNYNINQPRHFCKSCQRYWTEGGTMRNVPVGAGRRKTKNNNSSHYRYITINEGLRIARISAPHGTNGKVLSFGSDSPMNSVLNLAEDKIASKSTQNDVPWLVPPGFPPPLLSNHPAAFWNANLPRVSTNLSCPTLNSPSCGRNYSILGKRVRGWDMLEAGDVQREEERNQRSGSVLVPKTMRINDPSEAAKSSIWTTLGIKKESWNGGSMFDAFQSSKDGKNQKHQKVETCPVLRANSAALSRSVYFHENTGISSS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2743 375 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Acco04g2743 375 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Acco04g2743 375 PANTHER CYCLIC DOF FACTOR 2 1 370 IPR045174 GO:0003700|GO:0006355
Acco04g2743 375 MobiDBLite consensus disorder prediction 21 99 - -
Acco04g2743 375 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Acco04g2743 375 MobiDBLite consensus disorder prediction 46 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2743 Acco-ChrAcco04 44241690 44243249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2743 1 368 C2C2-Dof Transcription Factor Family AT5G62430 42.216 1.40e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco04g2743 zf-Dof 6.7e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g0735 11 14739081 14739965 Acco04g2743 04 44241690 44243249 CCT
Acco04g2743 04 44241690 44243249 Acco13g0732 13 5403181 5405838 ECH
Acco04g2743 04 44241690 44243249 Acco04g2743 04 44241690 44243249 ECH