Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2679 ATGATGACGGGCGGGAGGGTCCTTATGGGTTCTCTTACTAATGTTTCCAATTTGGGTATTTTGCTTCAAAATCAAGCCGCTCCTCCCTCTTCTGACTCTCCGGATGCCTTTTTCCTTTCTGGCTCTTCTTCTTCTTTCCTCGGTTCAAGATCCATGGTGAGCTTCGAAGATGTTAAACGAGGGAAAGGATGTAATCGTTCATTTTTTAGCCCTTTTGATCATGATGAAAATGGAGATGAAGATTTGGATGAATACTTTCATCAACCTGAGAAGAAGAGGCGGTTGACTGTTGATCAAGTCCAGTTTCTTGAGAAAAGCTTTGAGGTAGAGAACAAGCTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGGTTGGCTTGCAGCCTCGGCAAGTTGCCATTTGGTTCCAGAACCGCCGTGCACGATGTAAGACAAAACAGCTGGAGAAGGATTTCGAATCTCTGCGGGCTAGTTATGACAGTCTCAAAGCTGACTACGATAACCTTCTCAAGGAGAAAGATAAATTAAATGCTGAGGTTGCAAATCTCACGGAGAAGGTGCTTCTTAGAGAGAAACAAGAGGGAAACTACAAGCAGGAAGACAAGAGCAAAGTTAAAGAACCAGAACAAGCGCAAAAGCTCTTGTTGGACACTTGTTCTGATGGTGAAGGTTCCAAAGTCTCTGTTGGGGCGTGCAAACAGGAAGAGATGTGTTCAGCCAAGAGTGACATATTTGATGCTGATAGCCCACATTACACTGATGGAGTTCACTCTTCGCTCCTGGAACCTGGGGATTCCTCCTATGTATTTGAACCTGATCAGTCAGATTTATCTCAGGATGAAGAAGACAACTTGAGCAAGAACTTGTTTCCTCAATATACATTCCCCAAGCTTGAAGACGTTGACTACTCTGACCCGTCTGAAAGTTCATGCAGTTTTGGATTTCCAGCTGAAGATCATGATGCCTTTTGGTCCTGGTCTTACTAG 987 0.4417 MMTGGRVLMGSLTNVSNLGILLQNQAAPPSSDSPDAFFLSGSSSSFLGSRSMVSFEDVKRGKGCNRSFFSPFDHDENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKVQLAKEVGLQPRQVAIWFQNRRARCKTKQLEKDFESLRASYDSLKADYDNLLKEKDKLNAEVANLTEKVLLREKQEGNYKQEDKSKVKEPEQAQKLLLDTCSDGEGSKVSVGACKQEEMCSAKSDIFDADSPHYTDGVHSSLLEPGDSSYVFEPDQSDLSQDEEDNLSKNLFPQYTFPKLEDVDYSDPSESSCSFGFPAEDHDAFWSWSY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2679 328 FunFam homeobox-leucine zipper protein ATHB-6-like 94 140 - -
Acco04g2679 328 Coils Coil 138 193 - -
Acco04g2679 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 67 228 IPR045224 GO:0003700
Acco04g2679 328 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Acco04g2679 328 Gene3D - 141 192 - -
Acco04g2679 328 SMART HOX_1 89 150 IPR001356 GO:0003677
Acco04g2679 328 CDD homeodomain 91 147 IPR001356 GO:0003677
Acco04g2679 328 Gene3D - 95 140 - -
Acco04g2679 328 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Acco04g2679 328 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Acco04g2679 328 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Acco04g2679 328 Pfam Homeobox associated leucine zipper 146 187 IPR003106 GO:0006355|GO:0043565
Acco04g2679 328 MobiDBLite consensus disorder prediction 263 289 - -
Acco04g2679 328 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Acco04g2679 328 SUPERFAMILY Homeodomain-like 71 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2679 Acco-ChrAcco04 43598593 43600193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2679 29 326 Homeobox Transcription Factor Family AT3G01470 38.361 3.59e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco04g2679 Homeodomain 1.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2679 04 43598593 43600193 Acco04g2679 04 43598593 43600193 ECH