Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2634 ATGGGTGGTGGCAATGGCAAGCGCAGGTGGAGAATTTCCTTCCATCGTCCTTCTTCTTCTTCCTCTTCGTCTGATTCCAAGCTCGAACCAAAGCAACCTCCTAAGGAGTTTCTTTGTCCAATTTCTGGGACGTTCATGTCCGACCCTGTTGTTGTTACTTCCGGTCACACATTCGAGCGTGTTGCCGTTCAAGTTTGCAGAGATTTGAACTTCTCCCCCAGCCTCGAAGATGGTTCTCGACCTGATTTCTCCACCGTCATTTCCAATTTGGCCATCAGAAGTACAATCTCTAATTGGTGTAAAAACTCCGGTATGGAACTCCCTCGCGCGCCTGAATATAGCTCTGTTGTGAGTGCTGTACGCGAATCAATGGCGTCCCAGAAGGACTCGCCAGATTTAAGGGTTTCGGAGAGGGAATTGCTGAGGGCGATGGCGGACAACCCGCCGGTGATATTCTCCCACGCCGCCACCGAGCTGCGTCCTCCGGTTAACCACTTTGATTCGTGTTCCTCGGAGGAATCCGTAATCTTCGTGCCAAGCCCCGGTACGCCTCCGCATCTAACCACTCGTCCAGCCTGTTACTCTTCATCGTCGTCTTCTTCCGTAACCGTCGAATCGGAAATTCAAAACCCTAATGGCCCAATTTCCGAAGAAGAGGACAAATTAGTCTCGAAGATGAAAAGCAGTGAGATCTTCGAGCAAGAAGAAGCCGTTATATCACTGAGAAGCATCACGAGGAACAGAGAGAACACCCGAATTTCTCTCTGCACTCCCCGATTGCTTGACGCCCTACGACCTTTGATCGCCTCCAGGTACTCCGCTGTTCAAGTGAACGCCGTCGCTTCGCTAGTCAATCTCTCCCTTGAGAAATCCAATAAGGTGAAGATCGTTCGGCTGAAATTCGTCCCCCTTCTCATCGACGTCTTGAAGGGTGGATCCGATGAAGCGCAGGAACACGCAGCCGGCGCCCTCTTCAGCTTAGCTTTAAATGAAGACAACAGAATGGCCATCGGAGCTCTCGGCGCGTTTCAGCCACTCATGTACGCGCTGAGATCCGAGTCGGCGCGTACCCAAAACGACTCCGCGCTCGCGTTGTACAACCTGACCTTGGTACCAAGCAATCGGGTCAAGCTCGTTAGACTCGGGGCAATCCCGACCTTACTCGCGATGTTGAAATCAGGTAAATTGAGGAGCCGAGTGCTGCTAATTCTTTGTAATCTAGCTGCGTGCACGGAGGGGCAATCGGCTATGCTGGACGGTGATGCAGTAGAGTGCTTTGTGAGTTTATTAAAGGGGAAACAGTTGGACGCGGAGTCGACTCGCGAGAACTGTGTTGCTGCGCTGTATGCGCTTAGCCATGGAAGCTTGAGGTTCAGAGCAGTGGCAAAGGAGGCAAGGGTTATGGAGGTGTTGAAGGAGGTTGAAGAGAGAGGTACAGAGAGAGCCAGAGAGAAAGCGAGGAGGATCATGCAGAAGTTGCGAGCGGGTGGAGAAGACGGGGAAGATGGAAACGGGTCAACTTTTGGTTGGGATTCGGGCGGGCTGAACCGGAATCGGTTCCGAGGGAGGAATGGTAACGGTGCGAACTCAACTGCATTTTAG 1602 0.5225 MGGGNGKRRWRISFHRPSSSSSSSDSKLEPKQPPKEFLCPISGTFMSDPVVVTSGHTFERVAVQVCRDLNFSPSLEDGSRPDFSTVISNLAIRSTISNWCKNSGMELPRAPEYSSVVSAVRESMASQKDSPDLRVSERELLRAMADNPPVIFSHAATELRPPVNHFDSCSSEESVIFVPSPGTPPHLTTRPACYSSSSSSSVTVESEIQNPNGPISEEEDKLVSKMKSSEIFEQEEAVISLRSITRNRENTRISLCTPRLLDALRPLIASRYSAVQVNAVASLVNLSLEKSNKVKIVRLKFVPLLIDVLKGGSDEAQEHAAGALFSLALNEDNRMAIGALGAFQPLMYALRSESARTQNDSALALYNLTLVPSNRVKLVRLGAIPTLLAMLKSGKLRSRVLLILCNLAACTEGQSAMLDGDAVECFVSLLKGKQLDAESTRENCVAALYALSHGSLRFRAVAKEARVMEVLKEVEERGTERAREKARRIMQKLRAGGEDGEDGNGSTFGWDSGGLNRNRFRGRNGNGANSTAF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2634 533 SMART arm_5 289 329 IPR000225 GO:0005515
Acco04g2634 533 SMART arm_5 330 370 IPR000225 GO:0005515
Acco04g2634 533 SMART arm_5 410 453 IPR000225 GO:0005515
Acco04g2634 533 SMART arm_5 371 409 IPR000225 GO:0005515
Acco04g2634 533 SUPERFAMILY ARM repeat 221 493 IPR016024 -
Acco04g2634 533 FunFam RING-type E3 ubiquitin transferase 15 107 - -
Acco04g2634 533 MobiDBLite consensus disorder prediction 493 513 - -
Acco04g2634 533 Pfam Armadillo/beta-catenin-like repeat 330 369 IPR000225 GO:0005515
Acco04g2634 533 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Acco04g2634 533 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Acco04g2634 533 SUPERFAMILY RING/U-box 19 108 - -
Acco04g2634 533 MobiDBLite consensus disorder prediction 1 33 - -
Acco04g2634 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 107 IPR013083 -
Acco04g2634 533 Pfam U-box domain 34 102 IPR003613 GO:0004842|GO:0016567
Acco04g2634 533 PANTHER U BOX DOMAIN-CONTAINING 26 492 - -
Acco04g2634 533 Gene3D - 216 495 IPR011989 -
Acco04g2634 533 FunFam RING-type E3 ubiquitin transferase 217 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2634 Acco-ChrAcco04 43175873 43177474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2634 3 524 U-box Gene Family AT5G65200 55.172 0.0 525