Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2591 ATGACTCGTTACTCAAATCACGACCATCGTCGTCTTCTCTCTTTTCCTGCTGTATTCCCATGCCGAGACATCTCTCCCTCCACTCTTCTCACTTCTTTAATCTCTCTCTCCCTAAATATCTGTAATTTCAAATCCAGATTCTTCCCCACACAGCGACGTAATGCCGGAGAAATCATACGCCAGATTGATGTCATCCTCATGTTACTCCAGGATCTTCCAGAAATCCCAGAACAATCCCCTTTTATTCTCTGTTTCTCCGAGCTCCACTTTAGTTTCCAGAAGATTCTGTTCTTGCTTCAAGATTGCAGTCGTGAAGATTCCAGATTATGGATGCTCATGAAATCCCAATACGTCGCCTCCCAATTTCGTGACATAATTCGTGGGGTTGCCACTGCGCTTGACGTATTATTATTGCCGCTGCGTCGGATTGAGGTTTGTGATGATGTGAAGGAATTGGTGGAACTCGTGGCCAACCAAGCTCGGAAAGTGAAGTTCGAAGTTGGCCCTGTCGATGAAGAGAATTCAAAACTAGTTGGTTCGATTTTGCGTCAGTTTGAGAAGGGAATTGAGCCTGAATTGGATGATATGAAGCGAGTTTTGGATTATCTAGAGATAAAGACTTGGACTGATTGTAACAATGAGATTGAATTCTTACAAGAAGCGATGGATTTTCAGTTCTCTGAGCGCGAGCCTGAGGCTCCTCTTCTAAGTGGTTTAATTGGATTCTTAAGTTATTGCAGGGGAGTGATATTTGAAAATCATGATCCCAGCAGCCCCACAGATGATTCAGAAGGAAGGTGTAGCACAAAGAAGATGATTAATGGCTTAAACCCTGAGGATTTTCGATGCCCGATTTCGCTTGAGCTAATGACGGACCCAGTAACTGTATCAACAGGTCAAACCTACGATCGAAGTTCGATTGAACAATGGCTGAAATCTGGAAACAAAACCTGTCCCAAAACAGGGGCAAAGTTGAAGAACACAGACTTGATCCCGAACACAACACTTCGAAAGCTTATACATCAATTATGCGTCGACAATGGCGTTTCCTTGGCCAAATTAAACAATCAAAGTCGCGACATATCGAAGACCGTCCTCCCGGGAAGCCCCTCAGCGGCTCACGCCACGCAATTTTTGTCCTGGTTTCTTTCTCGGAGGCTCGTTTTTGGAACAATGGAGCAGAAGAACAAAGCAGCGTATGAGATTCGTTTGCTTGGAAAATCCAACATTTTTAACCGGTCGTGTCTGATCCAAGTGGGGACAGTGTCACCTCTGCTTCTACTTTTGTCAACGAGGCACAAATCGGCGCAAGAGAACGCCATTGCTGCTCTGTTGAAGCTCGTAAAGCACAACAATGGCAAAGAAGCTATAATGGAAAATGGAGGCTTAAAGCCAATTGTGTTTGTCCTCGAGAAAGGAATAAGTCTGGACTCACGCCAAATCGCAGCCGCCATAATATTCTATCTGTCTTATGCAAGACATTACAGAAAATTGGTAGGTGAAAACCCAGACGTAATTCCTTCTCTCGTTAAACTGATAAAGGAAGGAACAACGCGTGGGAAGAAGCATGCCATGTCAGCAATCTTCGGGCTTCTCTTACATACAAGTAATCATAAAAGAGTAATTGAAGCCAATACAGTGCAAGTGATTATTGATCTGCTAGCTTCGACAGAGAAGGAAGATGTGATGACAGATTCCTTGGCTGTTCTTGGGGCTTTATCAGAGAATAATGAAGGTGTAGAAGCCATGTTGAAAGTGTCAGCTGTGCCTTTGATCAGTGGGATACTGAAATCAACAACGAGCAAAACAGGGAAAGAACATTGTGTTTCGATTTTGTTATCACTGTGTGTGAATGGAGGAGAAGAAGTGATAGGTGTAATGGCGAAAGACGCATCGATAATGGGTTCCTTGTATTTGATTTCTATGGATGGGTGTCGTGGGGCAAAGAAAGCTCGATTTCTCATGAAGATTTTGCACGAGTTTTATGGAAAACCAACTTCCACAGTTGCAGGAGAAGAACAAAACCTTGACGCTATTAATTTGTTACGTATTAGATGA 2058 0.4339 MTRYSNHDHRRLLSFPAVFPCRDISPSTLLTSLISLSLNICNFKSRFFPTQRRNAGEIIRQIDVILMLLQDLPEIPEQSPFILCFSELHFSFQKILFLLQDCSREDSRLWMLMKSQYVASQFRDIIRGVATALDVLLLPLRRIEVCDDVKELVELVANQARKVKFEVGPVDEENSKLVGSILRQFEKGIEPELDDMKRVLDYLEIKTWTDCNNEIEFLQEAMDFQFSEREPEAPLLSGLIGFLSYCRGVIFENHDPSSPTDDSEGRCSTKKMINGLNPEDFRCPISLELMTDPVTVSTGQTYDRSSIEQWLKSGNKTCPKTGAKLKNTDLIPNTTLRKLIHQLCVDNGVSLAKLNNQSRDISKTVLPGSPSAAHATQFLSWFLSRRLVFGTMEQKNKAAYEIRLLGKSNIFNRSCLIQVGTVSPLLLLLSTRHKSAQENAIAALLKLVKHNNGKEAIMENGGLKPIVFVLEKGISLDSRQIAAAIIFYLSYARHYRKLVGENPDVIPSLVKLIKEGTTRGKKHAMSAIFGLLLHTSNHKRVIEANTVQVIIDLLASTEKEDVMTDSLAVLGALSENNEGVEAMLKVSAVPLISGILKSTTSKTGKEHCVSILLSLCVNGGEEVIGVMAKDASIMGSLYLISMDGCRGAKKARFLMKILHEFYGKPTSTVAGEEQNLDAINLLRIR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2591 685 FunFam RING-type E3 ubiquitin transferase 357 669 - -
Acco04g2591 685 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Acco04g2591 685 SUPERFAMILY ARM repeat 392 633 IPR016024 -
Acco04g2591 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515
Acco04g2591 685 Pfam U-box domain 278 342 IPR003613 GO:0004842|GO:0016567
Acco04g2591 685 CDD RING-Ubox_PUB 278 330 IPR045210 -
Acco04g2591 685 SMART arm_5 534 575 IPR000225 GO:0005515
Acco04g2591 685 SMART arm_5 576 617 IPR000225 GO:0005515
Acco04g2591 685 SMART arm_5 450 491 IPR000225 GO:0005515
Acco04g2591 685 SMART arm_5 408 449 IPR000225 GO:0005515
Acco04g2591 685 Gene3D - 385 632 IPR011989 -
Acco04g2591 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Acco04g2591 685 FunFam RING-type E3 ubiquitin transferase 277 349 - -
Acco04g2591 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 588 IPR000225 GO:0005515
Acco04g2591 685 PANTHER U BOX DOMAIN-CONTAINING 67 657 - -
Acco04g2591 685 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Acco04g2591 685 SUPERFAMILY RING/U-box 278 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2591 Acco-ChrAcco04 42816977 42819034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2591 10 666 U-box Gene Family AT1G60190 39.763 9.48e-153 457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2591 04 42816977 42819034 Acco04g2591 04 42816977 42819034 ECH