Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2562 ATGCATGTTGATCTCACCGTTATGCTCATTCTTCAGGTTAAACTCAAGGAACGTAGAACTTTGGGAATTGATTGTTCTCAGTATGAAGGTAGTGGGTCGTCCGAGGAGGACATCAGCAAGGAAGAGAAAGAACTAAACGAGTCCAAGAGAATCGCTGAGGATCGAGAGTTAAAGGACAAACTTCTTCGTAGATATAGCGGATATATTGTTGGCCTAAGGCATGAATTTTCTAAAAAGAAGAAGAAAGAGAAGCTACCCAAAGAAGCCAGACAAATATTGCTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACGGAAGCGGATAAGGTTGCATTAGCTGAATGGACAGGTCTGGATCAAAAACAAATAAACAATTGGTTTATTAACCAAAGGAAGCGCCATTGGAAGCCAACGGAGGAAATGCAAGCAGCAGTTTGGGATGGCCTCTATGGACCTTTTTCCTCGAGTGATTGA 480 0.425 MHVDLTVMLILQVKLKERRTLGIDCSQYEGSGSSEEDISKEEKELNESKRIAEDRELKDKLLRRYSGYIVGLRHEFSKKKKKEKLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVWDGLYGPFSSSD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2562 159 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 145 - -
Acco04g2562 159 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Acco04g2562 159 ProSiteProfiles 'Homeobox' domain profile. 76 139 IPR001356 GO:0003677
Acco04g2562 159 ProSiteProfiles ELK domain profile. 56 76 IPR005539 GO:0003677
Acco04g2562 159 CDD homeodomain 90 139 IPR001356 GO:0003677
Acco04g2562 159 SMART ELK_2 56 77 IPR005539 GO:0003677
Acco04g2562 159 Pfam ELK domain 56 77 IPR005539 GO:0003677
Acco04g2562 159 Gene3D - 74 147 - -
Acco04g2562 159 SUPERFAMILY Homeodomain-like 77 151 IPR009057 -
Acco04g2562 159 Pfam Homeobox KN domain 96 135 IPR008422 GO:0003677|GO:0006355
Acco04g2562 159 SMART HOX_1 78 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2562 Acco-ChrAcco04 42535748 42536686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2562 29 155 Homeobox Transcription Factor Family AT1G23380 62.500 6.82e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Acco04g2562 Homeobox_KN 3.5e-16 CL0123