Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2553 ATGCCTGAAAATCCATGGACGACCTTCTTCTTCTTATTCCTAGTAAATGCACTTTTACTTCATTCCCAACATTCTTTTATTGCTTCTGCTGTTAACCCACAAGGGCAAGCTCTTCTTTCATGGAAGACAACATCTCTAAACGGGTCCTCGGAAGTGCTGGGTAATTGGGACCCGATTGATGACACTCCATGTGGCTGGTTTGGAGTCAGCTGCAACTTCAAGAATGAGGTTGTGCAATTAGATCTAAGGTATGTTGATTTGCTTGGAAGTATTCCTTCTAATTTCACCTCATTGAGTTCCTTGACCAAGCTTATCCTTATTGGAACGAACCTTACTGGTTCTATCCCAAAAGAGATAGGCTCTCTTAGCAATCTCACCTACTTGGATTTGAGTGACAACGCCTTGACTGGTGAGATCCCAAGTGAGCTTTGGTTTTTGCCTGAGCTTCAAGAACTTCATCTTAACTCAAACCAGCTTGAAGGGTCGATTCCAATTTCAATTGGGAATCTCACAAAGTTGGAGCGGCTGACCTTGTATGATAATCAGCTAAGTGGTGAAATTCCCAGAACGATTGGCAATCTGAAGAATCTGCAAGTGATTCGAGCCGGTGGAAACAAGAATCTTGAAGGTTCTTTGCCTCAAGAAATAGGAAACTGTACCAAATTGGTTATGTTGGGTTTAGCTGAAACAAGTATCTCAGGATTTCTTCCTCCAACTCTTGGCCTCCTCAAGAAGCTCAACACTATTGCAATTTACACTTCCCTTCTCTCTGGCCAGATTCCTCCTGAACTTGGTGATTGCACTGAACTTGAGAACATCTATTTGTACGAGAATTCCCTCACTGGATCATTGCCTAGCAGATTGGGAAATCTTAGGAATATTAAGAATCTTCTTTTATGGCAGAACAATTTAGTTGGCACAGTCCCACCAGAAATTGGAAATTGCTACCAGTTATCTGTTATTGACATCTCGATGAACTCGCTTACAGGAAGCATTCCCAAGAGTTTTGGGAATTTGACGGCTCTGGAAGAACTTCAACTTAGTGAAAACCAGATTTCGGGGGAGATTCCTACAGAGCTAGGGAACTGCGAGCAACTCACTCACATCGAGCTGGATAACAATCAAATCACAGGGACGATACCTTCTGAATTTGGGAACCTTAGCAATCTGACTTTGTTGTTCCTGTGGCATAACAAGCTCGAAGGAAATATACCATCTGCACTTTCCAATTGCCAAAACCTCGAGGCTGTGGATCTGTCACAGAATGAACTGACAGGTCCCATGCCAAAGGGGATATTCGAACTCAAGAATCTCAACAAGCTTTTGCTGCTTTCTAATAATCTCTCCGGAGATATTCCATCTGAAATTGGGAATTGTTCGTCTTTGATTCGGTTCCGAGTGAGCAAAAATAAGATCACAGGGAGTATCCCCCCACAGATTGGGAATCTGAGGAACTTAAACTTTTTGGATCTTGGATTCAATCGGATTTCCGGAGTTATTCCGGAAGAGATGTCAGGCTGCAGGAATCTCACGTTCTTGGACCTACATTCCAATATGATCGCCGGGAGCTTGCCGGAGAGTCTAAGTGAGCTTGTCTCGCTTCAATTCATCGACTTCTCTGATAACATGATCGAAGGTATACTGAGCCCGAGATTAGGATCGCTTGGTTCACTGACAAAATTGATTCTCGGAAAGAATCATATCTCTGGATCAATTCCGAGTCAACTCGGTTCCTGTTCGAAGCTTCAGTTGCTGGATCTTAGTAGCAACAATTTCTCCGGCAATATCCCCGGAAGTCTTGGTAATATACCGGGGCTTGAAATTGCACTGAATCTGAGCTTGAATAAACTTTCGGGCGAGATTCCTCAGGAGTTTTCAGGCTTGGTTAAGCTGGGGATCTTAGACATTTCCCACAACGAGCTCACCGGCAACCTTCATTACCTCGCGGATCTCCAAAATCTCGTCGTCCTCAATATCTCCTACAACAAATTCTCCGGACGCATCCCGGACACGCCGTTTTTCGCAAAGCTTCCTATAAGTATGCTCGCCGGCAACCCATCGCTATGCCTATCCGGAAACCGATGCGCCGAAGACGATTATGGAAGTCGTTCAGGCAGGCGAGCGAAGACGGCGCGTATAGCAATGGTGGTCCTTCTTTGCACAGCATGTGCTCTGCTCTTGGCGGCGCTGTACGTCGTCATTGCGGCAAAACGACAACAGAGGGGCCATGGTAACGATCTCGATCTCGACGGGAGGGAAAGTGACATGGAGATGGGCCCACCATGGGAAGTGACAGTGTACCAGAAGCTCGACCTGTCAATTTCCGACGTGGCAAAGTGTCTCACCGCCGGGAACGTCATTGGGCGGGGACGATCCGGCGTCGTTTACAGAGTGAACACGCCAGCGGGAATAGAAATGGCCGTGAAGAGGCTCAGGTCGTCGGAGAAATTCTCAGCGGTGGCGTTCTCGTCGGAGATAACGACATTGGCTAGAATACGACACCGTAATATCGTGAGGCTATTGGGTTGGGCGGCGAACCAGAAGACGAAGTTACTGTTATATGATTATTTACCGAACGGTAATCTGGATACGTTTTTACACGAGGGGTGCACAGGACTAATCGAGTGGGAGACACGGTTCAAGATAGCACTGGGCGTGGCAGAAGGCTTAGCTTACCTGCATCATGACTGTGTTCCTGCTATCTTGCACCGGGACGTAAAAGCGCATAACATTCTGTTAGGTGATAGTTACGAGCCGTGTCTCGCAGATTTTGGTTTTGCCAGATTGGTTCAAGATGACCAAGCTTCCTTCTCGGCGAATCCACAGTTCGCTGGTTCTTACGGCTACATTGCGCCGGAGTATGGGTGCATGCTGAAAATTACAGAGAAGAGCGATGTGTATAGCTACGGAGTGGTACTGTTAGAAATAATAACAGGAAAACGACCGGTGGACGCGTCGTTTGGTGAGGGTCTACATGTGATAGACTGGGTGAGAGACCACCTGAAGAAAAAGAAGGACCCTGTGGAGATTGTGGATCCAAAGCTTCAAGGCCACACAGACACACACATACAAGAGATGATTCAAGCTCTCGGAATCTCCCTCCTCTGCACCAGCACTCGCCCCGATGATCGTCCCACCATGAAAGACGTCGCCGCCTTGCTCCGAGAGATCCGGCATGATACTCCCGCGGGCCACGAGGCCCACAATCCCAAGCCCAAGCCCAAGCCCACGACCAACTCGTCTTCCTCCTCCTCTGTTACTCGAGCCCAGTTGTTGCTTCTTGATCAGCCTTCGTCTCATTCTTCTTCGCTTGCTTATTCGTCTTCTACTCTACAAGGAAGGAGTGCGTGA 3351 0.4733 MPENPWTTFFFLFLVNALLLHSQHSFIASAVNPQGQALLSWKTTSLNGSSEVLGNWDPIDDTPCGWFGVSCNFKNEVVQLDLRYVDLLGSIPSNFTSLSSLTKLILIGTNLTGSIPKEIGSLSNLTYLDLSDNALTGEIPSELWFLPELQELHLNSNQLEGSIPISIGNLTKLERLTLYDNQLSGEIPRTIGNLKNLQVIRAGGNKNLEGSLPQEIGNCTKLVMLGLAETSISGFLPPTLGLLKKLNTIAIYTSLLSGQIPPELGDCTELENIYLYENSLTGSLPSRLGNLRNIKNLLLWQNNLVGTVPPEIGNCYQLSVIDISMNSLTGSIPKSFGNLTALEELQLSENQISGEIPTELGNCEQLTHIELDNNQITGTIPSEFGNLSNLTLLFLWHNKLEGNIPSALSNCQNLEAVDLSQNELTGPMPKGIFELKNLNKLLLLSNNLSGDIPSEIGNCSSLIRFRVSKNKITGSIPPQIGNLRNLNFLDLGFNRISGVIPEEMSGCRNLTFLDLHSNMIAGSLPESLSELVSLQFIDFSDNMIEGILSPRLGSLGSLTKLILGKNHISGSIPSQLGSCSKLQLLDLSSNNFSGNIPGSLGNIPGLEIALNLSLNKLSGEIPQEFSGLVKLGILDISHNELTGNLHYLADLQNLVVLNISYNKFSGRIPDTPFFAKLPISMLAGNPSLCLSGNRCAEDDYGSRSGRRAKTARIAMVVLLCTACALLLAALYVVIAAKRQQRGHGNDLDLDGRESDMEMGPPWEVTVYQKLDLSISDVAKCLTAGNVIGRGRSGVVYRVNTPAGIEMAVKRLRSSEKFSAVAFSSEITTLARIRHRNIVRLLGWAANQKTKLLLYDYLPNGNLDTFLHEGCTGLIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDSYEPCLADFGFARLVQDDQASFSANPQFAGSYGYIAPEYGCMLKITEKSDVYSYGVVLLEIITGKRPVDASFGEGLHVIDWVRDHLKKKKDPVEIVDPKLQGHTDTHIQEMIQALGISLLCTSTRPDDRPTMKDVAALLREIRHDTPAGHEAHNPKPKPKPTTNSSSSSSVTRAQLLLLDQPSSHSSSLAYSSSTLQGRSA 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2553 1116 ProSitePatterns Protein kinases ATP-binding region signature. 787 809 IPR017441 GO:0005524
Acco04g2553 1116 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
Acco04g2553 1116 Gene3D Phosphorylase Kinase; domain 1 764 856 - -
Acco04g2553 1116 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 430 524 - -
Acco04g2553 1116 SUPERFAMILY Protein kinase-like (PK-like) 768 1055 IPR011009 -
Acco04g2553 1116 SUPERFAMILY L domain-like 34 305 - -
Acco04g2553 1116 SMART LRR_typ_2 170 194 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 555 579 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 291 315 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 339 363 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 483 507 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 146 169 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 387 411 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 122 145 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 435 459 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 508 531 IPR003591 -
Acco04g2553 1116 SMART LRR_typ_2 651 675 IPR003591 -
Acco04g2553 1116 Pfam Protein kinase domain 784 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2553 1116 SUPERFAMILY RNI-like 272 647 - -
Acco04g2553 1116 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Acco04g2553 1116 Pfam Leucine rich repeat 317 376 IPR001611 GO:0005515
Acco04g2553 1116 Pfam Leucine rich repeat 464 520 IPR001611 GO:0005515
Acco04g2553 1116 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 383 1049 - -
Acco04g2553 1116 FunFam Leucine-rich repeat receptor protein kinase EMS1 525 609 - -
Acco04g2553 1116 Gene3D Ribonuclease Inhibitor 431 699 IPR032675 -
Acco04g2553 1116 SMART LRR_sd22_2 170 196 - -
Acco04g2553 1116 SMART LRR_sd22_2 531 549 - -
Acco04g2553 1116 SMART LRR_sd22_2 339 365 - -
Acco04g2553 1116 SMART LRR_sd22_2 507 530 - -
Acco04g2553 1116 SMART LRR_sd22_2 387 416 - -
Acco04g2553 1116 SMART LRR_sd22_2 122 145 - -
Acco04g2553 1116 SMART LRR_sd22_2 628 653 - -
Acco04g2553 1116 SMART LRR_sd22_2 483 506 - -
Acco04g2553 1116 SMART LRR_sd22_2 267 293 - -
Acco04g2553 1116 Gene3D Transferase(Phosphotransferase) domain 1 857 1073 - -
Acco04g2553 1116 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 857 1071 - -
Acco04g2553 1116 SMART serkin_6 781 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2553 1116 FunFam Putative LRR receptor-like serine/threonine-protein kinase 610 694 - -
Acco04g2553 1116 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Acco04g2553 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Acco04g2553 1116 Gene3D Ribonuclease Inhibitor 186 287 IPR032675 -
Acco04g2553 1116 MobiDBLite consensus disorder prediction 1059 1116 - -
Acco04g2553 1116 Gene3D Ribonuclease Inhibitor 288 364 IPR032675 -
Acco04g2553 1116 Pfam Leucine Rich repeat 123 138 IPR001611 GO:0005515
Acco04g2553 1116 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 31 205 - -
Acco04g2553 1116 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 206 429 - -
Acco04g2553 1116 ProSiteProfiles Protein kinase domain profile. 781 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2553 1116 Gene3D Ribonuclease Inhibitor 365 430 IPR032675 -
Acco04g2553 1116 MobiDBLite consensus disorder prediction 1073 1116 - -
Acco04g2553 1116 ProSiteProfiles Leucine-rich repeat profile. 124 147 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2553 Acco-ChrAcco04 42428696 42432828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2553 30 1076 Receptor kinase-like Gene Family AT5G56040 53.571 0.0 1109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco04g2553 Pkinase 1e-41 CL0016