Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2545 ATGGCCTCGTCATCGTCGTCAAGCTCATACAATTCGCCATGTGCGGCGTGCAAATTCTTGAGGAGAAAATGCTTGTCAGGTTGCTTATTCGCTCCTTACTTCCCACCGGAAGAGCCTCAGAAATTCGCCAACGTCCACAAGATATTCGGAGCCAGCAACGTCACTAAGCTCCTCAACGAGCTCCTCCCTCACCAGCGAGAAGACGCCGTCAACTCCCTCGCCTACGAGGCGGAGGCTCGCGTCAGAGACCCTGTCTACGGCTGCGTCGGCGCCATCACTTTCCTCCAGAGACAGGTCCAGAGACTTCAGAAGGAGCTTGACGCCGCCAACGCCGATCTCCTTCGTTATGCCTGCCATGATATATCGTCGCCTCCGCCGCCTGCATATCATCCGTTTTCCGTTTCTGACGGCGCTTACAGGCAATCTTCGAGCAGTTATTCGCTTCCTTGGGCTGATTCTTCTTCGGAGGACATCAATAATGGAGGAGGAGGAGGAGGAGGTAATTTGTGA 510 0.5451 MASSSSSSSYNSPCAACKFLRRKCLSGCLFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVQRLQKELDAANADLLRYACHDISSPPPPAYHPFSVSDGAYRQSSSSYSLPWADSSSEDINNGGGGGGGNL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2545 169 Coils Coil 92 119 - -
Acco04g2545 169 MobiDBLite consensus disorder prediction 146 161 - -
Acco04g2545 169 MobiDBLite consensus disorder prediction 146 169 - -
Acco04g2545 169 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Acco04g2545 169 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Acco04g2545 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2545 Acco-ChrAcco04 42326373 42326882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2545 4 117 AS2 family AT5G63090 89.474 1.29e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco04g2545 LOB 1.8e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2545 04 42326373 42326882 Acco13g0577 13 4163210 4165466 CCT
Acco04g2545 04 42326373 42326882 Acco13g0577 13 4163210 4165466 ECH
Acco04g2545 04 42326373 42326882 Acco04g2545 04 42326373 42326882 ECH