Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2541 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAACTGAGAAAGGGTCTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATTACATTTCCACATATGGCGTTGGCTGCTGGAGTTCTGTTCCCAAACTCGCTGGGTTGCAAAGATGTGGGAAGAGTTGCAGATTGAGATGGATTAATTACCTGAGGCCTGATTTGAAGAGAGGCATGTTTTCTCAGCAAGAAGAAGATCTCATAATCAGCCTCCATGAAGTTCTTGGCAACAGGTGGGCTCAGATTGCAGCACAATTACCGGGAAGAACAGATAATGAGATAAAGAATTTCTGGAATTCAAGTCTGAAGAAGAAGCTGCTGAAGCAAGGGATTGACCCAACTACACACAAACCATTGAATATTGTTACAGAACCTCAATATCATCATCATCAATCATCAATAATGAAGGAGGAGAAGAAAACTGCTCTCACTAGAGATTCTTCAGAGACACTTGTATTGCCATCTTCTATACAGATTCCATTCTCAGTCTCATCATCATCACAAGGATCATCATCTCTCGCTGCAGGAAGTGATTCCGATAATAACCAGTTTGATCACAATAATGATAACGGTTATGACCCATTGGCCTTATTTGAGTCGTCGTTGTTCCGAATGAGTGGTTTAAACCAATTATCTTCTGGGTTTGGATTCAACATGTCCTCAATAATGCCAGGTCTGATCACTAACTACTCCACCATGACGGAGTTATCATCGGAAAATAAGTCGGCTTGGGGGATCAGTTCAAGCAATAGCTTGAGCAGCTGTGTTCAAGCAGGAGGGTGTCAGATAAGTAATAATAACAGCTTAATGGTGGATCCATTATTGTATCAGTTTCAATTTAACGGTGATGTAAAGAACGAAGAAGATTATTATCAGATGATGAAGACGGCGACGGCGACGGTGGCGGCCGCTGCAGGGTCGTCGTCGTGGGAAGAAGATGGCGGTGGCCAGATTCTGAATCAAAGCTCTATAGATTTCACCGCCACATATCCGTTAACGTCACTGTCAGAAGATCTGTCGCCCGCGAATTTTGATGCTTTCAACCATATGTGA 1083 0.4321 MGRHSCCVKQKLRKGLWSPEEDEKLFNYISTYGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLLKQGIDPTTHKPLNIVTEPQYHHHQSSIMKEEKKTALTRDSSETLVLPSSIQIPFSVSSSSQGSSSLAAGSDSDNNQFDHNNDNGYDPLALFESSLFRMSGLNQLSSGFGFNMSSIMPGLITNYSTMTELSSENKSAWGISSSNSLSSCVQAGGCQISNNNSLMVDPLLYQFQFNGDVKNEEDYYQMMKTATATVAAAAGSSSWEEDGGGQILNQSSIDFTATYPLTSLSEDLSPANFDAFNHM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2541 360 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Acco04g2541 360 PANTHER MYB DOMAIN PROTEIN 55 1 287 - -
Acco04g2541 360 CDD SANT 70 112 IPR001005 -
Acco04g2541 360 CDD SANT 17 61 IPR001005 -
Acco04g2541 360 FunFam MYB transcription factor 11 67 - -
Acco04g2541 360 Gene3D - 11 67 - -
Acco04g2541 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Acco04g2541 360 SMART sant 13 63 IPR001005 -
Acco04g2541 360 SMART sant 66 114 IPR001005 -
Acco04g2541 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco04g2541 360 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Acco04g2541 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco04g2541 360 MobiDBLite consensus disorder prediction 172 198 - -
Acco04g2541 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Acco04g2541 360 FunFam Transcription factor MYB86 69 136 - -
Acco04g2541 360 Gene3D - 69 155 - -
Acco04g2541 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2541 Acco-ChrAcco04 42237456 42238814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2541 1 129 MYB Transcription Factor Family AT1G57560 81.395 8.57e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g2541 Myb_DNA-binding 3.6e-14 CL0123