Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2538 ATGGGGAATTCAGTTTGGTTCAGTTTGATAAATGGAAAGTTATTGAATCAAATCAAATTGGATAAGCAAGACAGGCAGGAGGAGACAGAAGCCGAGAAGATGACAACGAGGTTTAAGAAGAACAGAAAGAAGAGAGGGCATGTGAGCGCTGGCCATGGTCGTATCGGAAAGCACAGAAAACATCCAGGAGGTCGTGGTAATGCCGGAGGTATGCACCACCACCGAATCCTCTTCGATAAATACCATCCTGGGTATTTCGGTAAGGTCGGTATGCGATACTTTCACAAACTTCGCAACAAATTCTATTGCCCTATTGTCAATATCGACAAACTCTGGTCCTTGTTACCCCAAGAAGTGAAGGATAAGGCTTCCAAGGATAACGCTCCGTTGATCGATGTCACTCAATATGGTTACTTCAAGGTGTTGGGCAAAGGGGTTTTGCCTGAGAATAAGCCCGTCGTCGTGAAGGCCAAGCTCGTGTCCAAGATTGCGGAGAAGAAGATCAAACAGGCTGGAGGAGCTGTTGTCCTCACTGCTTAG 540 0.463 MGNSVWFSLINGKLLNQIKLDKQDRQEETEAEKMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLLPQEVKDKASKDNAPLIDVTQYGYFKVLGKGVLPENKPVVVKAKLVSKIAEKKIKQAGGAVVLTA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2538 179 Gene3D - 91 179 - -
Acco04g2538 179 ProSitePatterns Ribosomal protein L15 signature. 140 172 IPR001196 GO:0003735|GO:0005840|GO:0006412
Acco04g2538 179 MobiDBLite consensus disorder prediction 38 67 - -
Acco04g2538 179 MobiDBLite consensus disorder prediction 22 67 - -
Acco04g2538 179 FunFam 60S ribosomal protein L27a 91 179 - -
Acco04g2538 179 MobiDBLite consensus disorder prediction 22 37 - -
Acco04g2538 179 Hamap 50S ribosomal protein L15 [rplO]. 34 178 IPR030878 GO:0003735|GO:0006412|GO:0015934
Acco04g2538 179 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 61 176 IPR021131 -
Acco04g2538 179 SUPERFAMILY Ribosomal proteins L15p and L18e 39 178 IPR036227 -
Acco04g2538 179 PANTHER 60S RIBOSOMAL PROTEIN L27A 34 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2538 Acco-ChrAcco04 42212439 42216926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2538 34 179 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 89.041 2.00e-96 274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2538 04 42212439 42216926 Acco13g0570 13 4098436 4099502 CCT
Acco04g2538 04 42212439 42216926 Acco13g0570 13 4098436 4099502 ECH
Acco04g2538 04 42212439 42216926 Acco04g2538 04 42212439 42216926 ECH