Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2537 ATGAACCCTTACGACAACAGATATACAGATTCGACTTCTTATCGCAACCGCAGGAGTGATTTAAACGGATCTATGCGGCCGATGGTCCCTTCAATGATTGGCGGTGCCAGCTCGAGTTACGGTCGGGGAGGTCCTGCACCGGTTGGTTATAATATGGGTGGAAGAGGTGCTGGGAGCGCTTTTGGAACGGCACCTGCTGCCCCAAATTATAATGAGTTGCCGCCGTTCATGCCACCTCCTGGAGGCTTTGACGTAGGTCGCGGTGGTGGTGCTAGCCAAAGGGGCTTCGGCGGTAGACTTGGAGACGGCCATTTTAGTGATAGAAAAGATGACGTAGGTCGTCGTGGCGGTGGAAGAGATCGGGAAGGTGGTAGATTTGGTGGACGTCACGGAGACAAGCTCTCGGGGAGAGGAGGTGGGTTTGGAGGTAGAGGTTTTGGTGGAAGCGCAGGATTTGGCGGTGGCCGTGGTGGTGGTGGTAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGATTCCATTTGAGAAGAATTTTTACATCGAAAGCCCGTCGGTGGCGGCCATGTCTGATCATGAGCTTATGGCTTACCGTGCAACTAAGGAGATCACAGTGCAAGGGCATGACATTCCTAAACCAATTCGAACTTTTCGAGATGCAAATTTTCCTGATTACTGTCTTGAGGTGATTGCTAAGTTGGGTTTTGTGGAGCCTACACCAATTCAAGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTGGTACAAGGTGAAGGTCCCATCGTCTTAGTTCTGGCTCCAACTAGAGAGTTAGCTGTTCAAATTCAGGAAGAAGCTGTAAAATTTGGCTCTCGAGCAAATATCAGAAGTACTTGCATCTATGGTGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAGAGAGGTGTTGAAATTGTTATTGCTACACCTGGTCGCCTAATTGATATGTTGGAAGCTCAGCATACCAATCTGCGAAGGGTGACTAACCTTGTGTTGGATGAAGCTGATCGAATGCTGGACATGGGCTTTGAACCTCAGATAAGAAAAATTATTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATACAAGGTAATTATTGGATCGCCAGATTTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTTTAACAGAAGCGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAGTGATGGATGGGAGTCGAATTCTGATATTTATTGAGACAAAAAAGGGCTGCGATCAAGTTACAAGGCAATTGAGAATGGATGGATGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTTCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATTAAATGTGTGATCAATTATGATTTCCCATCAAGCCTGGAAGATTATGTCCACCGAATTGGTCGAACAGGGCGTGCAGGGGCTAAAGGAACCGCCTTCACCTTTTTCACGCATGCAAACGTCAAGTTTGCCAGGGACTTGATCAAGATCTTACAAGGTGCTGGCCAGGTTGTGAGTCCTGCTCTATCTGCCTTGACTCGGTCAGCTGGTTCTGGTCATTTTGGATCTGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGCAATCGAGGTCACATATCTGGATCCAATATCATTCCTCTGGGTTCAAGGAAACCATGGTAG 1953 0.4736 MNPYDNRYTDSTSYRNRRSDLNGSMRPMVPSMIGGASSSYGRGGPAPVGYNMGGRGAGSAFGTAPAAPNYNELPPFMPPPGGFDVGRGGGASQRGFGGRLGDGHFSDRKDDVGRRGGGRDREGGRFGGRHGDKLSGRGGGFGGRGFGGSAGFGGGRGGGGRGGRHGGSSKDDLDNIALPKQDFRNLIPFEKNFYIESPSVAAMSDHELMAYRATKEITVQGHDIPKPIRTFRDANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTNLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVLTEAEKYNRLIRLLKEVMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSSIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANVKFARDLIKILQGAGQVVSPALSALTRSAGSGHFGSGGNFRSRGRGGYGNRGHISGSNIIPLGSRKPW 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2537 650 Gene3D - 202 437 IPR027417 -
Acco04g2537 650 MobiDBLite consensus disorder prediction 1 20 - -
Acco04g2537 650 MobiDBLite consensus disorder prediction 101 132 - -
Acco04g2537 650 CDD DEADc_DDX5_DDX17 241 435 - -
Acco04g2537 650 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 208 606 - -
Acco04g2537 650 MobiDBLite consensus disorder prediction 1 29 - -
Acco04g2537 650 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Acco04g2537 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 589 IPR027417 -
Acco04g2537 650 SMART helicmild6 488 569 IPR001650 -
Acco04g2537 650 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Acco04g2537 650 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 608 IPR001650 -
Acco04g2537 650 FunFam ATP-dependent RNA helicase RhlB 439 611 - -
Acco04g2537 650 Pfam Helicase conserved C-terminal domain 459 569 IPR001650 -
Acco04g2537 650 Gene3D - 438 611 IPR027417 -
Acco04g2537 650 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Acco04g2537 650 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Acco04g2537 650 CDD SF2_C_DEAD 448 578 - -
Acco04g2537 650 MobiDBLite consensus disorder prediction 86 175 - -
Acco04g2537 650 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Acco04g2537 650 SMART ultradead3 248 451 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2537 Acco-ChrAcco04 42208314 42212210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2537 226 589 Eukaryotic Initiation Factors Gene Family AT3G19760 36.264 4.50e-72 237