Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2533 ATGGTGATGAGTTCCGCAGCCATGGGGACGATCTTATTCCTCATCATCCTCATCTCTCCCGTCTCTGCACTCGACTTCCTCTTCAATTCCTTCAACGGCACCATCAATGGCACCGACCTTACTCTCGTCCACGACGCTCGCGTCGACCATAACGTTATCAGAATGACCAACAACTCCAACCAGTACTCCTTCGGACGATCCTTCTACCCCACCGTCATTGCTATGAAACCTAACTCTAATTCCTCCAACATTTCTTCGTTCTCCACTTCCTTCGTCTTCTCCATTTTGCCCCAGATCTCAACTAGCCCAGTCACGAAATCCGCTGGCTACTATAATTCCACCGGTGGTTACGTGCCTATTCGAATGCGTAATGGACGTAACGTTAGAGCTTGGATCGATTTTGATGGCGCAAATTTGGAGATAAATGTTACGGTGGCGCCAGTTGGCGTTGCTCGCCCATCTACGCCGACGCTTTCGTATAGAGATCCCGTTATAGCTAATTACGTGTCTGCAGAGATGTATGTTGGATTTTCTGCATCGAAAACGAATTGGGTTGAAGCACAGAGGCTTCTAGCTTGGAGCTTCAGCGACAGTGGACCTGCAAAAGACATTAATACGGCAAATTTGCCAGTATTTGAGCCAGAATCGTCTTCTTCGAAGCTTTCTGGTGGGGCGATTGCCGGGATCGTTATCGGATGCCTTGCTTTTATGATGATTTGTGGTTCTGGATTTTACCTGTGGTGGCGAAACAAGAAATTGAAAGAGCAAGAGGACGAAATTGAAGATTGGGAGCTGGAGTATTGGCCCCACAGATTCTCATACGAGGAGCTCAGCGTGGCTACTGATGAATTTCGCAAGGAGAATCTCTTAGGGTATTTGGCACCTGAGCTGGCGTCGGTGGCTGCGCCGACGTCGGCGAGCGATGTGTACAGCTTCGGAGTGGTGTTGTTGGAGGTTGCGTGCGGGCGGAGACCGATTGACACGTCGGTGCCGGAGGAGGAGGCGGAGCTGATTGATTGGGTGAGGGATTTGTATGCGAAAGGAAGTGTGGTCGAGGCGGCGGATTCAAGGATTAAGGGTGAGTATGATGAGGGAGACATGGAGATGATTTTGAAGCTTGGTTTAGCTTGTTGTCACCCTGATCCGCGGAGGAGGCCGGCCATGAAGGAGGTCGTTGTGCTTTTGGTGGGCGAGGAACTCTCGGTGGCGCCGGTGGAATCGTAG 1224 0.509 MVMSSAAMGTILFLIILISPVSALDFLFNSFNGTINGTDLTLVHDARVDHNVIRMTNNSNQYSFGRSFYPTVIAMKPNSNSSNISSFSTSFVFSILPQISTSPVTKSAGYYNSTGGYVPIRMRNGRNVRAWIDFDGANLEINVTVAPVGVARPSTPTLSYRDPVIANYVSAEMYVGFSASKTNWVEAQRLLAWSFSDSGPAKDINTANLPVFEPESSSSKLSGGAIAGIVIGCLAFMMICGSGFYLWWRNKKLKEQEDEIEDWELEYWPHRFSYEELSVATDEFRKENLLGYLAPELASVAAPTSASDVYSFGVVLLEVACGRRPIDTSVPEEEAELIDWVRDLYAKGSVVEAADSRIKGEYDEGDMEMILKLGLACCHPDPRRRPAMKEVVVLLVGEELSVAPVES 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2533 407 Pfam Legume lectin domain 24 98 IPR001220 GO:0030246
Acco04g2533 407 Pfam Legume lectin domain 117 209 IPR001220 GO:0030246
Acco04g2533 407 Pfam Protein tyrosine and serine/threonine kinase 290 393 IPR001245 GO:0004672|GO:0006468
Acco04g2533 407 Gene3D Transferase(Phosphotransferase) domain 1 278 402 - -
Acco04g2533 407 CDD TM_EGFR-like 222 256 - -
Acco04g2533 407 Gene3D - 105 229 - -
Acco04g2533 407 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 212 IPR013320 -
Acco04g2533 407 SUPERFAMILY Protein kinase-like (PK-like) 291 393 IPR011009 -
Acco04g2533 407 Gene3D - 22 104 - -
Acco04g2533 407 PANTHER - 118 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2533 Acco-ChrAcco04 42182359 42184260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2533 290 397 Receptor kinase-like Gene Family AT1G15530 64.220 8.77e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Acco04g2533 PK_Tyr_Ser-Thr 2.9e-08 CL0016