Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2500 ATGGACCAGTTTCCCACTTCACTCAAAAGGTTCTTCATGGACTCCAAGTTCACTTTTGTTGGAGTTGAAATAGAGAGAGATATCAGTATGGGAATGTTGGAGAGAGGACAGGGTTCTTCATCTCCAAGGAAAGCTTATCTGTTATCTCATACCGATTTGGCGATTTGCTCTACAAATCTTCTCTTGTTTCTTCATTGTTTTCGTCGTGAGATCATGGAGATGGAGCGCGTCTTTGAGTTTCCGCACACTCACCTGGATCGTCGGCCGAGGAAGAGGCCGCGTTTAGGTTGGGACGTCTCTGAGGCCCCAAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGAAATTTTTCAAGCTATGCATCTTCAAGTGGGCCCTCAGAGCATACAAATAATTCTCTAAATGTTAAGGGAGTAGCTCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAGAATTTAACTTCTCGCTATAAGATACATAGCAAAATGGGGGAAGGAACTTTTGGTCAAGTCTTGGAATGCTGGGACCGAGAACGGAAGGAGATGGTTGCAATTAAAATTGTTCGTGGCATCAAAAAGTATAGAGAAGCTGCTATGATAGAGATTGAGGTGCTGCAACAGCTTGCTAAACATGATAAAGGTGGCAATCGTTGTGTACAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTCTTTGAGAAACTTGGGGCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTTCGCGAGATTGGCAGACAACTATTGGAATGTGTAGCATTCATGCATGATTTGCGCATGATCCATACTGACTTGAAGCCGGAAAACATACTGCTAGTCTCATCAGACTATGTTAAAGTTCCTGACTACAGGAGCTCTTCCAGATCGCCAAGTGCTTGTTTCAAGAGAGTACCAAAGTCAAGTGCTATCAAAGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAGGACCAGACTTACATTGTATCAACACGTCATTATAGGGCACCTGAAGTTATACTTGGACTTGGATGGAGTTATCCCTGTGATATATGGAGTGTGGGTTGCATATTGATAGAATTATGCACGGGTGAAGCTTTGTTTCAGACTCATGAGAATTTGGAGCACCTTGCAATGATGGAAAGGGTGCTGGGACCGTTGCCCCAGCACATGTTGAAGAGAGTAGACCGACATGCTGAGAAGTATGTTAGAAGGGGTAAATTGGATTGGCCAGAGGGGGCCACTTCTAGGGATAGTATTAAAGCTGTAATGAAGCTGTCTCGGCTTCAGAATCTGGTAATGCAGCATGTGGATCATTCGGCTGGAGATCTGATACATGTCTTGCAGGGTTTACTTAAATATGACCCTTCTGAAAGGTTAACTGCTAGGGAGGCTCTAAGACATCCCTTCTTTACGAGAGATCACCTTAGGAGATAG 1506 0.4363 MDQFPTSLKRFFMDSKFTFVGVEIERDISMGMLERGQGSSSPRKAYLLSHTDLAICSTNLLLFLHCFRREIMEMERVFEFPHTHLDRRPRKRPRLGWDVSEAPKAQVGLFCGQDVGNFSSYASSSGPSEHTNNSLNVKGVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGASLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLRMIHTDLKPENILLVSSDYVKVPDYRSSSRSPSACFKRVPKSSAIKVIDFGSTTYEREDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILIELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGKLDWPEGATSRDSIKAVMKLSRLQNLVMQHVDHSAGDLIHVLQGLLKYDPSERLTAREALRHPFFTRDHLRR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2500 501 Gene3D Phosphorylase Kinase; domain 1 156 249 - -
Acco04g2500 501 SMART serkin_6 169 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2500 501 Pfam Protein kinase domain 169 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2500 501 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 72 497 - -
Acco04g2500 501 CDD PKc_CLK 156 494 - -
Acco04g2500 501 FunFam Serine/threonine-protein kinase AFC2 245 494 - -
Acco04g2500 501 SUPERFAMILY Protein kinase-like (PK-like) 156 498 IPR011009 -
Acco04g2500 501 MobiDBLite consensus disorder prediction 121 140 - -
Acco04g2500 501 FunFam Serine/threonine-protein kinase AFC2 156 249 - -
Acco04g2500 501 Gene3D Transferase(Phosphotransferase) domain 1 223 494 - -
Acco04g2500 501 ProSiteProfiles Protein kinase domain profile. 169 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g2500 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Acco04g2500 501 MobiDBLite consensus disorder prediction 121 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2500 Acco-ChrAcco04 41743807 41750422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2500 174 494 Core Cell Cycle Gene Families AT1G76540 27.083 9.61e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Acco04g2500 Pkinase 1.3e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2500 04 41743807 41750422 Acco04g2500 04 41743807 41750422 ECH