Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2491 ATGCCTATCACGTCTATACCTTCCTTGAAGACCCTAACCATGGCAGAATTACGCCTTCTCTCACTTCCTTCTTTAACCTCCAACAAAACCAAACACCCTTTCATCTCCATTCCGTCTAAACCTTTTAAACTTCAGGGCTCTTGCTCCAATTCCTCCTTCTTTGTACCATCTCTGTCCCTCACTAAGAAAACCCACAATTTATCTATACTCACTTTCGTAGCTCAGACTTCGGACTGGGCTCAACAGGACGAAGACAACACCGTCACCATAGATGAAGAGGAAATTCAAGACGTGGATGACGCAGAAGCTCGTCTTTCGGATTGGGAGGTCGATGGTGAAGGTGCGGGAATTGAGGGTAGCGAGGTCGAAGGAGAGAGTAATGAAGATGATGGATTTTTGAAGGGCGATTTTTCTGAACCACCCGAAGATGCCAAACTTTTTGTTGGTAATTTGCCTTATGATGTCGATAGTCAGAGATTAGCCATGCTTTTTGAGCAGGCCGGAACGGTGGAAATTGCTGAGGTTATTTATAATAGGAGCACTGACCAAAGTCGTGGATTCGGATTTGTAACGATGAGCACAGTTGAAGAAGCAGAGAAAGCTGTTGAAAAGTTCCATCGCTATGAACTTGATGGAAGACTGTTGACTGTTAACACAGCTGCTCCAAGAGGATCACAGCCTGAACGCCCACCCAGGGCCTTTGAACCATCCTTTAGAGTCTACGTAGGCAACTTGCCATGGGATGTTGATAACGGTCGCTTGGAGCAGATTTTCAGTGAACATGGTAAGGTTGTGAGCGCACGGGTAGTCTTTGACAGAGAGACTGGTCGGTCTCGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAACAGAAATGAATGATGCCATTGCTGCTCTTGATGGCCAGAGTTTGGACGGGAGGGCCATCAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGAGGCGGCTTCTGA 972 0.4691 MPITSIPSLKTLTMAELRLLSLPSLTSNKTKHPFISIPSKPFKLQGSCSNSSFFVPSLSLTKKTHNLSILTFVAQTSDWAQQDEDNTVTIDEEEIQDVDDAEARLSDWEVDGEGAGIEGSEVEGESNEDDGFLKGDFSEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFHRYELDGRLLTVNTAAPRGSQPERPPRAFEPSFRVYVGNLPWDVDNGRLEQIFSEHGKVVSARVVFDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGGF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2491 323 Gene3D - 74 226 IPR012677 -
Acco04g2491 323 SUPERFAMILY RNA-binding domain, RBD 140 232 IPR035979 GO:0003676
Acco04g2491 323 Gene3D - 227 323 IPR012677 -
Acco04g2491 323 SMART rrm1_1 239 312 IPR000504 GO:0003723
Acco04g2491 323 SMART rrm1_1 145 218 IPR000504 GO:0003723
Acco04g2491 323 MobiDBLite consensus disorder prediction 114 136 - -
Acco04g2491 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Acco04g2491 323 SUPERFAMILY RNA-binding domain, RBD 228 321 IPR035979 GO:0003676
Acco04g2491 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 215 IPR000504 GO:0003723
Acco04g2491 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 310 IPR000504 GO:0003723
Acco04g2491 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 316 IPR000504 GO:0003723
Acco04g2491 323 FunFam 31 kDa ribonucleoprotein, chloroplastic 228 322 - -
Acco04g2491 323 PANTHER OS02G0815200 PROTEIN 31 318 - -
Acco04g2491 323 CDD RRM2_NsCP33_like 239 314 - -
Acco04g2491 323 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2491 Acco-ChrAcco04 41688599 41691243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2491 115 320 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 5.52e-23 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2491 04 41688599 41691243 Acco13g0546 13 3959050 3960808 CCT
Acco04g2491 04 41688599 41691243 Acco13g0546 13 3959050 3960808 ECH
Acco04g2491 04 41688599 41691243 Acco04g2491 04 41688599 41691243 ECH