Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2478 ATGCACCATCTTTCGGTTCCCTCCCTTTCTCTTTATATACCCCTCAACACCTTCACATTTCTCACACCACCTTCCACTTCACAAACACACATTTTCCTCTGTTTCAAAATGACTACCTTCTTCTTCTTCCTCTGTTTTTTCCTCATCCCTACCCTCATTTCTTCTTCCCCTTTACACGACCCTGAATCCATCGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTGTTGCTAGGAGGAATTTGGGCTACCTCTCGTGTGGAACTGGAAATCCGATCGACGATTGTTGGAGGTGCGATCCTAATTGGGAGAAGAACAGGCAGAAGCTAGCCGATTGTGCGATAGGGTTCGGAAAGAACGCCATTGGCGGGAGAAACGGCCGGATTTACGTGGTGACCGATGCCGGCGATGACAATCCGGTGAGTCCACGGCCGGGGACTCTCCGGTACGCCGTGATTCAAGACGAACCGTTGTGGATCATATTCGCGAGGGACATGGTGATTCAGTTGAAGGAGGAGCTGATCATGAATTCCTTCAAGACCATCGATGGACGAGGCGCGAGCGTTCACATTGCCGGTGGGCCCTGCATAACGATCCAGTACGTGACTAACATTATAATCCATGGAATCCACATACACGACTGTAAGCAGGGAGGGAACGCTATGGTGAGAAGCTCCCCACGGCACTACGGCTGGAGAACCATATCGGACGGCGATGGTGTCTCCATCTTCGGAGGAAGCCACGTGTGGGTAGATCACTGCTCGTTGTCGAACTGCAAAGACGGCTTGATCGACGCGATCATGGAGTCCACCGCGATAACCATTTCGAACAATTACATGACGCACCACGATAAGGTTATGTTACTGGGTCACAGCGACTCTTATGCACAAGACAAGAACATGCAAGTCACCATCGCTTTTAATCACTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGCAGACATGGATATTTCCATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCCATTGGAGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAACAGATTTGTGGCCCCCGATAACAGATTCAGCAAAGAGGTGACAAAACATGAGGATGCACCAGAGAATGAATGGAGGGGCTGGAACTGGAGATCAGAAGGGGACTTGTTGCTAAACGGTGCGTTTTTCAGGGCATCAGGTGCTGGAGCCTCTTCTAGCTATGCAAGGGCTTCTAGTTTAAGTGCTAGACCATCTTCTCTTGTGGGTCCTCTCACCTCTGGTGCTGGCACACTCACCTGTAGAAAAGGTTCTAGCTGCTGA 1317 0.4966 MHHLSVPSLSLYIPLNTFTFLTPPSTSQTHIFLCFKMTTFFFFLCFFLIPTLISSSPLHDPESIVQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQKLADCAIGFGKNAIGGRNGRIYVVTDAGDDNPVSPRPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIMESTAITISNNYMTHHDKVMLLGHSDSYAQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAPENEWRGWNWRSEGDLLLNGAFFRASGAGASSSYARASSLSARPSSLVGPLTSGAGTLTCRKGSSC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2478 438 FunFam Pectate lyase 89 431 - -
Acco04g2478 438 Pfam Pectate lyase 173 355 IPR002022 -
Acco04g2478 438 Gene3D - 89 431 IPR012334 -
Acco04g2478 438 SMART amb_all 164 361 IPR002022 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Acco04g2478 438 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Acco04g2478 438 SUPERFAMILY Pectin lyase-like 71 432 IPR011050 -
Acco04g2478 438 PANTHER PECTATE LYASE 18-RELATED 58 436 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2478 Acco-ChrAcco04 41590207 41593020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2478 10 438 Polysaccharide Lyase AT5G63180 77.030 0.0 677