Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2469 ATGGTGGGTTCGGCAGCTCTGGCACCAGAGCCAAACTCAGAGGTGTTTTCTTGGCTAAAATCTCTTCCTCTTGCCCCAGAGTACCGCCCTAGCTTGGCTGAGTTTCAAGATCCGATTTCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTTCCCCCCGTGCCACCTTCTTCGAAGAAGACAGCAATTTCGAATCTTAATCGCTCGCTGGCAGCACGAGCTGCCTCCTCTGACTCTTCCAATTTGAAATCCCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGGCCAGCACAGCGTCCTGTGTGGAAGAGTGGGGAACACTACACGTTTCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTACCTGAAGAAATGGGCCAAGAAAGGTGGTCTTTCGCCTCTGGAGATAGAAACACTTTATTGGAAGGCAACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGATATGCCTGGTTCGGCTTTTGTTCCCGTGAATGGAAGAAAATATAGAGAGGCAGGGGAGGGAACGACTCTTGGTGAGACTGCATGGAACATGAGGTTGGTGTCACGGGCAAACGGTTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCTGGTGTTACATCACCAATGGTGTACGTAGCTATGCTGTTCAGCTGGTTTGCTTGGCATGCAGAGGATCATGACCTGCATAGTTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGCGTGCCGCGGGATGCCGCTGTCGCGTTTGAGGAAGTGGTCAGAATTCATGGGTATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTACTTGGGGAGAAAACCACAGTGATGTCGCCTGAAGTGTTTATTAGTGCCGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCCAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCAAACATTGCGACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTAGGAGGGCGTCAATAAACTATCCTCCCATGGTTTCACATTTTCAGTTACTTTATGATCTTGCCCTGGCTTTGTGTTCAAGAATTCCTGGGGGCATCAGTGCTGAACCAAGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTTATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGACTTGCTTCATTGTCTTTGCAAAGGATCTGCTATAGTACTTCTTCCTCGGAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTCGCAGCAGTTGAACCCTGGGTATTCTCTCAGAGAATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGAAAGGATTTTCAGTAAAAGAGAAGTTTGCTTCTTTGTGTGAAAGGAACAGGATCTCCTCATTAAGTGTAAATGATAACACAAGCTCTTCAAGTTCTGTGCCACTTCAAAGAGACACTGAAAGAGAGACAAGCCAAGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTTACTTGTGGTATACTAAGCTTTGCTTGCGTTGCTATTGTGCACCCCAAGGAACCAGCTGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAAGCATCAATAAGTATACACATGCCCATGGTGATGCAACTACTTCTGAGAAAAGCACCTTTGCAGGATGGAAGGTTCAAAAAGACACAGACTATGATCTTCCTGTTCAATCTGGAGGATACCAGATACAGGTGGAAGATCAATCACATGAGGTAGCTTCACGTACTAGAGGACAGAAAGAAACATCAGCCCTTGGCTTATTGGCATCGGCATATGGAAATTCATCTGATTCAGAGGAAAATCAAGTTGACCCAGGTAATGCAGTTCATGATAATGAATCTCATGTTATGGACCGTCCATCAGATGGTATATCTCAGAATATGTCTAGCTTGCCTTCTCTTTTCCAAGATTGCAATGCAAGTGCAGTCAAGGTTCATGGTGATTATGGGCAAAAAGCAAACTCAGAAGGTTGTGATACCACTTCAGGGACTGCATTTAAGAATACGAGTTGTGCCTTAAATTATTCTCAAGATGTTCGTGAGGTTGAAACATCAATGCTTTGTAACATGGGATGTTCCATTGAGGATAGAAGTGCTTCATTGTTGCCACATTCTGATGAAGATTCATCTAGATTGCATGTCTTCTGTCTGGAGCATGCTGCTGAAGTGGAGCAGCGACTTCACCCAATAGGAGGAGCACACATATTACTCCTTTGTCATCCAGATTACCCCAAGGTAGAGGCTGAAGCAAAAAATGTGGCAGAAGAACTGGGTATTGGTGGCATATGGAAGAATCTTGCTTACAGAAATGCCACCCTAGAAGATGAGGAGAGGATCCAGTCAGCTCTGGATAGTGAGGAAGCTATTCCCGTAAATGCAGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAATCTTAGCCGCTCTCCTCTCTACAGTAAGCAGATGCCTTATAATTCTGTCATATATTATGCTTTTGGCCGTAGTGCTCCAGCAAGCTCACCCACAGAACCCAAGGTTTACCAAAGAAGGACCAGCAAACAGAAAAAGGTGGTTGCTGGAAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGAGAAAGTCTTACATGGGTGGTCGTCGCCTGACCAGAAAATTGAGAGATCAGAAAGTGCTCCCACAGACAATTTTACTAATAGAAAATATGCTAAGAAAAGGAAAATGACTGTAGAGAGTAGAAAAGCCGTGAAAGTCAGTTTTGCTGAGAGAGTATATATCTCTGATAATTCTATTGAAGAGAAATACAACCCGCAGCTAAGGACATATTCTAGAACCAAGCAAGCCAAATATTTTGACAGAGATGATGCAGCATCAGAAGAGGGTTATTCTCCTGTGCAACAATATGGAAAACCTACAGCAAAGCAAGCCAAATACACCGAAAGTGATGAAGTTTCAGATGATTCAATTGATGATAATTCTCCCATGCAGCAGGGAAGGAATTTTAAAGTCAAAGAACCTAAATTCATTGACAGTGATGTTGTCTCAGATGATGCAATGGGATATGATTCTGATTTACAACTGAGGAGAGGGCTTAGCAATAAACAAATCGAAGACTCAGAAAGAGATGGAGTTTCAGAGGATTCCATGGGTGATAGTTCTCTTAAGCGGCGGAAGAAGACTCATAAAAGCAAGCCAGCCAAATATTTTGCTAAAGATGCAATTTCTGATGACCAAATGGAGGATCATTTTCACAAGCAGCGAAGAAGGATTCCTAAAAGCAGACCAGACAAATACTTTGGTAGAGAAGATATCATGGTATCTGATGACCAACTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGAAGACGGCCCAAAGATTTCACCGGAGACGATATTACATCTGATGACCAACTGGAGGACCGTTCTGGCATGTGTCATAGAAGGATTCCTAAAAGCAGACCAGGTAAATGGCCAGTCAAGGAAGATGTGATATCTGATGACCAATTGGAGGATCACTTTCGGAAGCCACGTGGTACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAACAAAATTATGGCTGACTCATCTGATAACTATACTCATCCGCTGCATAGAACTCCTAAGAGGAAGCAAGTTAAAAGCATGGATGAAGAAGACATAAATTCTGATGATCAAATGGAGGATTCATCTCTTCAGCAGCCAAGGAGGACTCTTCGAAGCCAGCAATCTAAATTAGAGGCGCAGCAAGAAATGAAACAATCTAACTCTTGCCGTGTGAAACAGACATCCCGACCGCTAAAACGAGGCACTCAGCTGCAGGTAAAATCAAAGACTTATCAGAAAATGAAGCAGCCTCCCCGAGTGCAGAAAAATCGACCTGATAAATTCAGAGATTTTAACATGTGTTCAGAAGAGGAGGAGGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGTACCGAAAGTTGAGGAGTCTGAAGCAAAACCAAAAGGAAAGGTAACGCAAAGGAAGAAGGCGAACAATGCTACAGCTCTGAAGGTTTCCAAAATGAAGGATGAGGAAGCAGAATACGAGTGTGATATTGATGGTTGCACAATGAGTTTCGGCTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGCGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTGCATACCGGAGTTCGTCCATATGTTTGTGCTGAGCCAGGGTGTGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACCGGCCATTCAACAAAGAAGAGTCGTTAA 4674 0.4397 MVGSAALAPEPNSEVFSWLKSLPLAPEYRPSLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAISNLNRSLAARAASSDSSNLKSQPTFTTRQQQIGFCPRKQRPAQRPVWKSGEHYTFQEFEAKAKAFEKNYLKKWAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGRKYREAGEGTTLGETAWNMRLVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHAEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNDLLHCLCKGSAIVLLPRSSSDISVCSKLRVGSQQLNPGYSLRECNSEGMNSSKGFVSDDLVFSRTTQVKGFSVKEKFASLCERNRISSLSVNDNTSSSSSVPLQRDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVHPKEPAARYLMSADCSFFNDWVVGSGVSINKYTHAHGDATTSEKSTFAGWKVQKDTDYDLPVQSGGYQIQVEDQSHEVASRTRGQKETSALGLLASAYGNSSDSEENQVDPGNAVHDNESHVMDRPSDGISQNMSSLPSLFQDCNASAVKVHGDYGQKANSEGCDTTSGTAFKNTSCALNYSQDVREVETSMLCNMGCSIEDRSASLLPHSDEDSSRLHVFCLEHAAEVEQRLHPIGGAHILLLCHPDYPKVEAEAKNVAEELGIGGIWKNLAYRNATLEDEERIQSALDSEEAIPVNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSAPASSPTEPKVYQRRTSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKVLHGWSSPDQKIERSESAPTDNFTNRKYAKKRKMTVESRKAVKVSFAERVYISDNSIEEKYNPQLRTYSRTKQAKYFDRDDAASEEGYSPVQQYGKPTAKQAKYTESDEVSDDSIDDNSPMQQGRNFKVKEPKFIDSDVVSDDAMGYDSDLQLRRGLSNKQIEDSERDGVSEDSMGDSSLKRRKKTHKSKPAKYFAKDAISDDQMEDHFHKQRRRIPKSRPDKYFGREDIMVSDDQLEHRIHKQQRSKGRRPKDFTGDDITSDDQLEDRSGMCHRRIPKSRPGKWPVKEDVISDDQLEDHFRKPRGTIPKSRQNKRKNKIMADSSDNYTHPLHRTPKRKQVKSMDEEDINSDDQMEDSSLQQPRRTLRSQQSKLEAQQEMKQSNSCRVKQTSRPLKRGTQLQVKSKTYQKMKQPPRVQKNRPDKFRDFNMCSEEEEEGGPSTRLRKRVPKVEESEAKPKGKVTQRKKANNATALKVSKMKDEEAEYECDIDGCTMSFGSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGVRPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKSR 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2469 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1467 1489 IPR013087 -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 81 100 - -
Acco04g2469 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1497 1519 IPR013087 -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1175 1198 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1206 1231 - -
Acco04g2469 1557 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 665 680 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1311 1370 - -
Acco04g2469 1557 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Acco04g2469 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1527 1551 IPR013087 -
Acco04g2469 1557 SMART JmjN_1 24 65 IPR003349 -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 948 982 - -
Acco04g2469 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1465 1494 IPR013087 -
Acco04g2469 1557 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Acco04g2469 1557 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1491 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 948 972 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 517 543 - -
Acco04g2469 1557 FunFam Probable lysine-specific demethylase ELF6 1522 1551 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1148 1168 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1036 1425 - -
Acco04g2469 1557 Gene3D Cupin 18 369 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 517 534 - -
Acco04g2469 1557 FunFam Probable lysine-specific demethylase ELF6 1492 1521 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1372 1418 - -
Acco04g2469 1557 SMART c2h2final6 1442 1464 IPR013087 -
Acco04g2469 1557 SMART c2h2final6 1465 1489 IPR013087 -
Acco04g2469 1557 SMART c2h2final6 1495 1519 IPR013087 -
Acco04g2469 1557 SMART c2h2final6 1525 1551 IPR013087 -
Acco04g2469 1557 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Acco04g2469 1557 SUPERFAMILY beta-beta-alpha zinc fingers 1505 1549 IPR036236 -
Acco04g2469 1557 Gene3D Classic Zinc Finger 1463 1549 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1286 1304 - -
Acco04g2469 1557 SMART cupin_9 196 365 IPR003347 -
Acco04g2469 1557 SUPERFAMILY beta-beta-alpha zinc fingers 1465 1501 IPR036236 -
Acco04g2469 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1495 1524 IPR013087 -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 665 697 - -
Acco04g2469 1557 SUPERFAMILY Clavaminate synthase-like 214 379 - -
Acco04g2469 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1525 1556 IPR013087 -
Acco04g2469 1557 Pfam jmjN domain 26 59 IPR003349 -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1238 1262 - -
Acco04g2469 1557 MobiDBLite consensus disorder prediction 1113 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2469 Acco-ChrAcco04 41477638 41488067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2469 1124 1556 C2H2 Transcription Factor Family AT3G48430 37.657 1.18e-72 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco04g2469 JmjC 5e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2469 04 41477638 41488067 Acco04g2469 04 41477638 41488067 ECH