Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2467 ATGGAGTCTTCTGAACCAGAATCAACTGCAATTTCGAATTCCAACGAGAAGCCTGACTTGGGCTTTCGCTCGGTCTCATCTTTCCCCAGTTCTGATCACGCTTCGGAAACCTCAGATCTTATTCATCTAGCTGAGCTCGATGCACTTCATGAGGAGTTTCAAAAGAAGCTGATTTTGAAGGATAAGGATGAAGAGGGAGAGACTGTGAACAAAGACGATGAGTTTGATGGTAGTAAGGAAGTGAGTGATAAAGTCGTTGCTGAGGAATCTTATGAGGTAGATGGGTGGGGTGAATATGACGATAATTGGAATGAAAATGAGGACAATAATTGGACTACGAATGTGAGCGGGAATGAGAATGATGAGGAAGGTGGAGCTTATGATCAAGCTGTCCATGAAGTGGAGAGAAGGGAAGCAACAAGCGGTGGTAGCAACCATCAGTACCCGGTGAGGCCCGAATCAGAAGATTGTGCATTCTATCTGAAAAATGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCAGGCTGGTAAAGAGAAGGCGGGAGAGAGAGAAGATTCAGCAGATATATCAGTGCAGGCAGAATGCAAGTATTATCTATCATCAGGAGGATGTAAGTTTGGAAAGGCTTGTAAATATAACCATTCAAGAGGAAAGTGTATAGTAGTTCCAGTTCGAGAGCTTAATTTTCTTGGTCTACCTATTCGTCTGGGGGAGAAAGAGTGCCCTTATTACATGCGTACTGGCTCTTGTAAGTTTGGAACAAACTGCAAATTTAATCATCCAGATCCTACAGTTGTTGGAGGAGGTGATCTTCCTGCAACATTCGGTAATGGTGGGTCTATATCATTACAAGGCATCTCACAGCCATCTGCACCCTCCTGGTCTTCTACAACAACATTAAATGAAACTGCTCCTTTTATGCCAATGATGTTGTCACCTCCTCAAGGTTCCGAATGGAATGTGTATCAGGCACCTGTCTACCTACCTGAGGGGAGCATGCGCCCACCTTCTGCATATATTATGAACAACCCAGCGATTGAGAAAAATATTTATATGCAACATCAAAAGAAGATGCAGGTTGTAGAGTTTCCTGAAAGGCCTGGGGAGCCTGAATGCAATTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGCTTACAAAGTTAGCCTCTGCTACATGCACCCTCAGTGACAAGGGTCTTCCGTTGAGACCTGACCAGAATGTATGCACGCATTACAGTCGCTACGGTATCTGCAAATTTGGACCCGCATGTAAGTTTGACCACCCAATAAACCAATCGCCCTCTTTAGAGCCTTCCCTTGCTCAGGAATCTCCCTACTCAAACTCTGCTAGAGTTGAAGTTGCTGCAAATGGAGGGGGTAATTGA 1449 0.4355 MESSEPESTAISNSNEKPDLGFRSVSSFPSSDHASETSDLIHLAELDALHEEFQKKLILKDKDEEGETVNKDDEFDGSKEVSDKVVAEESYEVDGWGEYDDNWNENEDNNWTTNVSGNENDEEGGAYDQAVHEVERREATSGGSNHQYPVRPESEDCAFYLKNGTCKFGFNCKFNHPVNRRKNQAGKEKAGEREDSADISVQAECKYYLSSGGCKFGKACKYNHSRGKCIVVPVRELNFLGLPIRLGEKECPYYMRTGSCKFGTNCKFNHPDPTVVGGGDLPATFGNGGSISLQGISQPSAPSWSSTTTLNETAPFMPMMLSPPQGSEWNVYQAPVYLPEGSMRPPSAYIMNNPAIEKNIYMQHQKKMQVVEFPERPGEPECNYFLKTGDCKFKSNCKFHHPRNRLTKLASATCTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINQSPSLEPSLAQESPYSNSARVEVAANGGGN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2467 482 MobiDBLite consensus disorder prediction 1 37 - -
Acco04g2467 482 SUPERFAMILY CCCH zinc finger 204 228 IPR036855 GO:0046872
Acco04g2467 482 Gene3D - 114 185 - -
Acco04g2467 482 Gene3D - 330 413 - -
Acco04g2467 482 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Acco04g2467 482 MobiDBLite consensus disorder prediction 59 91 - -
Acco04g2467 482 ProSiteProfiles Zinc finger C3H1-type profile. 376 404 IPR000571 GO:0046872
Acco04g2467 482 SUPERFAMILY CCCH zinc finger 422 450 IPR036855 GO:0046872
Acco04g2467 482 Gene3D - 188 275 - -
Acco04g2467 482 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Acco04g2467 482 MobiDBLite consensus disorder prediction 456 472 - -
Acco04g2467 482 MobiDBLite consensus disorder prediction 456 482 - -
Acco04g2467 482 MobiDBLite consensus disorder prediction 106 120 - -
Acco04g2467 482 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Acco04g2467 482 ProSiteProfiles Zinc finger C3H1-type profile. 424 452 IPR000571 GO:0046872
Acco04g2467 482 Gene3D - 423 471 - -
Acco04g2467 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 427 450 IPR000571 GO:0046872
Acco04g2467 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 378 403 IPR000571 GO:0046872
Acco04g2467 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 177 IPR000571 GO:0046872
Acco04g2467 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Acco04g2467 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 226 IPR000571 GO:0046872
Acco04g2467 482 PANTHER PROTEIN PHOSPHATASE RELATED 54 464 - -
Acco04g2467 482 SUPERFAMILY CCCH zinc finger 381 406 IPR036855 GO:0046872
Acco04g2467 482 SUPERFAMILY CCCH zinc finger 246 273 IPR036855 GO:0046872
Acco04g2467 482 SUPERFAMILY CCCH zinc finger 149 180 IPR036855 GO:0046872
Acco04g2467 482 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Acco04g2467 482 SMART c3hfinal6 424 451 IPR000571 GO:0046872
Acco04g2467 482 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Acco04g2467 482 SMART c3hfinal6 376 403 IPR000571 GO:0046872
Acco04g2467 482 SMART c3hfinal6 200 226 IPR000571 GO:0046872
Acco04g2467 482 MobiDBLite consensus disorder prediction 59 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2467 Acco-ChrAcco04 41455731 41458896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2467 372 473 C2H2 Transcription Factor Family AT3G02830 45.192 7.16e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco04g2467 zf-CCCH 1.8e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2467 04 41455731 41458896 Acco04g2467 04 41455731 41458896 ECH