Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2462 ATGATGCCGACGAATCCAGTATCCAGTACTGTATCTTATGGAAACACGAAGTCTGAGATGAGAAAAGAGTGTGTGGACTGTGCCCAGAAGCTTCATTCGATTCACGGAAAGAAGAAGACATCGTCAAATTTACCTTCTTCCTTCTTCAAGGTCATGATTGGCAGCGATTTTTCTAGCGTTTTGTATCTGCCTCCTAAGTTTGGTCCTACTGCGTCAACCTTGATTGACAAAGAAGCCATTATTGAGGATTCTAGTGGAGAGCAATGGACGGTACAAATATCAATTGTCGATAAGACTTATGCTTTTCAGGAGGGATGGAAAGCTTTTTCGTCGGAACACGGGCTTGAATTTGGACATTTTTTGGTGTTCAATTACATGGGAAGGTCTCACTTTGTTGTTAAGATTTTTGATAAATCTGGTTGTGAAAAAACTGATTTTCCCAATCAGAGAAAGCAGAAGAAGAGAAAAACGGTCACAGTTGACCTTGATGATAGCGATGAATTGTTTAATAGACAAGGTTTATTATCCTCGGAGTCAGACACGGGGAAGACGCAAAGCCAGGACAAAGTTGTTGGAGTGAAAGACAGTGCAGAAATTAACATAGAGCAAACCTCAGAAAATAGTAATAGTAACAAAATGTTCCGATCTTTGAACGAAGACAAAAACTATGAAGATCCTTGTTACTCGAAAGAACGAGACTTTGGAGACAAAGAAAGAGAGGACAGGGATAGTCTTATGTTTGATGTTTTCAGGTGTGAAATATTGAATAATTCAGGTGTTCACAGGACTGGCAAATTTACAAGCGGCAATGAAATAGTTGTTACAAGTATCTATAGCAAAGATCCTTTGCTTGAAGATATGTTGGGTAGTGGAGCAACTCGAGATCTGTTTGAAGTTGAGTTGACCAAAAGAAATCATTTTCTTGAAGAGTTAGACAAGAGTACATTCTCCTGTGAGAGAAATCCTCGCCAAAACAAGATTCCCGAGCATTTTTTGATCCCATGTACCATGCAACATGAAGAAATCAAAGAGAACTCAGATTGTGGGCTGCCAGAGACCCAGGAATTATTGATATCAAAAGAGGGATATCCTTTGCATGCTGGCAATTGTGAAAATACCAAAGAGATGTTTGTTGGGTTACATGTGTCCTTGGACGTTCCTATGTGCGATGGCATGTGGCAAATGGGGAGAATGATTCAAAAAGAGCTTCTGGACATGACTCCAGATGTGTGCATATACAATGATCAACTCCAGACGCCTATTGGAGATCAAAGCAGCGGTCTAAATTCAGTGAAAACTTTACCTTCTGACTGCGAGGAAGAGGGTGACGTGGCTAATGAGAATAGGGCTGGACAACTAGGAGACTGGGACAAAATGGTTGCAGGACTAATTGGACAGGTGTCAACAAGTCAGAGAAGGATCATCCACGATAATGTGCTTGCTGACAAGCCCGTTAGGCGCAGCAGCAGAATTGGAAAGCCATCATGGAAGCTGAGAGAGAGAATGTGGGAGCTGATCACATGCTTGCATCCATCTCAGAGACAGACAGTAAAGACAATGATTTGGAAAGATTGGTTGCTCGGTGGCGTTTGTTGCTCTGCAGAGGCCTTCATGTTTCCGTCCAATGGTGCTCCCGGTATCACGGTCAAGGACTCTAAAACCCTTCTTTTCGGTGAAAAGCCCGTTCCTGTGTTTGCACACAGTAACCCGGAAGAGATCCCATGGGCTGAGACTGGAGCTGAGTATATTGTTGAGACCATCAGTGACTTCACAGATAAAGAGAAGGCTGCTGCCCATTTGAAGGCTGGTGCAAAGAAGGTTATTCACGACAAATTTGGCATTGTTGAGGGGCAAGTAACCACATTTTACTCCATCACGTGTAGCCGGATGAATGTTCAATGGCCACCAGCTAAAGAATGGAAGGGTGCAAAAGCTTATTCAGTTGAAATTATTTCTAGCAGTATTGGAGCTGCTAAGGTTGTTGGGAAAGTGATTCCTGCTTTGAATGGAAAATTGACCGAAAGTCCTTTCCTTGTTCCCACTGTGAATCTTTCTGCTGTTGATCTCACTGTGAGGCTGGAAAATGCAGCCACCTACGACCAAATTAAAGCTGCCATCAAGGAGGAGTCTCAGGGCAAGTTGAAGGGAATCCTTGGTTACATTGAGGATGCGGTCTACACCGAAGACTTCATTGTGGACAGTAGGTGTGGATTATCATCTGATTGGTAG 2229 0.4289 MMPTNPVSSTVSYGNTKSEMRKECVDCAQKLHSIHGKKKTSSNLPSSFFKVMIGSDFSSVLYLPPKFGPTASTLIDKEAIIEDSSGEQWTVQISIVDKTYAFQEGWKAFSSEHGLEFGHFLVFNYMGRSHFVVKIFDKSGCEKTDFPNQRKQKKRKTVTVDLDDSDELFNRQGLLSSESDTGKTQSQDKVVGVKDSAEINIEQTSENSNSNKMFRSLNEDKNYEDPCYSKERDFGDKEREDRDSLMFDVFRCEILNNSGVHRTGKFTSGNEIVVTSIYSKDPLLEDMLGSGATRDLFEVELTKRNHFLEELDKSTFSCERNPRQNKIPEHFLIPCTMQHEEIKENSDCGLPETQELLISKEGYPLHAGNCENTKEMFVGLHVSLDVPMCDGMWQMGRMIQKELLDMTPDVCIYNDQLQTPIGDQSSGLNSVKTLPSDCEEEGDVANENRAGQLGDWDKMVAGLIGQVSTSQRRIIHDNVLADKPVRRSSRIGKPSWKLRERMWELITCLHPSQRQTVKTMIWKDWLLGGVCCSAEAFMFPSNGAPGITVKDSKTLLFGEKPVPVFAHSNPEEIPWAETGAEYIVETISDFTDKEKAAAHLKAGAKKVIHDKFGIVEGQVTTFYSITCSRMNVQWPPAKEWKGAKAYSVEIISSSIGAAKVVGKVIPALNGKLTESPFLVPTVNLSAVDLTVRLENAATYDQIKAAIKEESQGKLKGILGYIEDAVYTEDFIVDSRCGLSSDW 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2462 742 CDD B3_DNA 47 137 IPR003340 GO:0003677
Acco04g2462 742 Pfam B3 DNA binding domain 48 138 IPR003340 GO:0003677
Acco04g2462 742 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 550 608 IPR036291 -
Acco04g2462 742 SMART gp_dh_n_7 517 616 IPR020828 GO:0051287
Acco04g2462 742 SMART B3_2 48 139 IPR003340 GO:0003677
Acco04g2462 742 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 547 608 IPR020831 GO:0016620
Acco04g2462 742 Gene3D Dihydrodipicolinate Reductase; domain 2 604 740 - -
Acco04g2462 742 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 606 735 IPR020829 GO:0016620
Acco04g2462 742 SUPERFAMILY DNA-binding pseudobarrel domain 46 141 IPR015300 -
Acco04g2462 742 ProSiteProfiles B3 DNA-binding domain profile. 46 139 IPR003340 GO:0003677
Acco04g2462 742 Gene3D - 551 603 - -
Acco04g2462 742 Gene3D - 41 141 IPR015300 -
Acco04g2462 742 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 605 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2462 Acco-ChrAcco04 41376441 41383337 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2462 48 218 B3 DNA Binding Superfamily AT5G66980 29.891 6.16e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco04g2462 Gp_dh_C 7.9e-33 CL0139