Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2397 ATGGAGAATCACCATCTCCAGCCCCATCACCAGCACCAGCACGAGTACGAGCAAGCCCCACCCTCCTCCGTGTACCTACCTCAGCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTTCTTCCTTCCACCACCTCCTTCATCAGCAGCAACAGCAGCTTCTCAATTTCTGGTCCGCCCAGCGCCAAGAGATTGATCATGTCAACGATTTCAAGAACCACCAGCTCCCTCTCGCTCGCATCAAGAAGATCATGAAGGCCGATGAGGACGTTCGCATGATCTCCGCCGAAGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTCGATCTTGGATCCACGCCGAAGAGAACAAGAGGCGCACTCTCCAGAAGAACGACATCGCCGCTGCAATTACCCGCACTGATATTTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGCCCTTGGGGGAATGATGGCGGCCCCTGCGAGTGGTGTTCCTTATTACTATCCGCCTATGGGCCAACCTGCCCCCCCTCCTGGTGGCATGATGATTGGACGGCCGGCGCTGGATCCCTCCGGAGTGTACGCGCAACCGCCTTCGCAAGCGTGGCAGTCAGTGTGGCAGACGGCGACGGATGATGGGTCCTTCGGCAGCGCCGGGAGCAGTGGACAGGGCAATCTTGATGGCCCGAGTTGA 717 0.5802 MENHHLQPHHQHQHEYEQAPPSSVYLPQPPPPPPPPPPPSSFHHLLHQQQQQLLNFWSAQRQEIDHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAALGGMMAAPASGVPYYYPPMGQPAPPPGGMMIGRPALDPSGVYAQPPSQAWQSVWQTATDDGSFGSAGSSGQGNLDGPS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2397 238 Pfam Core histone H2A/H2B/H3/H4 48 137 IPR007125 GO:0003677
Acco04g2397 238 FunFam Nuclear transcription factor Y subunit gamma 43 152 - -
Acco04g2397 238 SUPERFAMILY Histone-fold 37 146 IPR009072 GO:0046982
Acco04g2397 238 MobiDBLite consensus disorder prediction 23 42 - -
Acco04g2397 238 MobiDBLite consensus disorder prediction 1 43 - -
Acco04g2397 238 Gene3D Histone, subunit A 41 152 IPR009072 GO:0046982
Acco04g2397 238 MobiDBLite consensus disorder prediction 1 16 - -
Acco04g2397 238 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 48 167 - -
Acco04g2397 238 MobiDBLite consensus disorder prediction 201 238 - -
Acco04g2397 238 MobiDBLite consensus disorder prediction 204 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2397 Acco-ChrAcco04 40591581 40595132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2397 22 221 CCAAT-HAP5 Transcription Factor Family AT5G63470 76.498 1.93e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Acco04g2397 CBFD_NFYB_HMF 3.5e-17 CL0012